Coexpedia

Overview

Massive amount of array-based transcriptomics data have been deposited in several public depositories such as Gene Expression Omnibus (GEO) and ArrayExpress. Recent advance of sequencing technology has enabled platform-independent transcriptomic profiling via RNA-seq, which grows size of public transcriptomics data ever increasing rate. Data mining system to extract functional hypotheses from these transcriptomics big data sources will provide new routes to human disease research. Coexpedia is a database of context-associated co-expression networks inferred from individual series of microarray samples for human and mouse of GEO.

Coexpedia is distinctive co-expression databases by the following three aspects.

All co-expression links were evaluated for functional association by statistical assessment.

All co-expression links are associated with particular biomedical contexts.

All co-expression links have associated medical subject heading (MeSH) terms, which provide anatomical or disease context information.

GEO series dataset

Human

GEO Acc.	Title
GSE473	PGA Human CD4+ Lymphocytes
GSE635	Identification of novel genomic determinants of cellular drug resistance in acute lymphoblastic leukemia.
GSE643	ASP sensitive all ALL
GSE648	VCR sensitive all ALL
GSE649	VCR resistant all ALL
GSE650	DNR sensitive all ALL
GSE653	ASP sensitive B-ALL
GSE654	ASP resistant B-ALL
GSE655	PRED sensitive B-ALL
GSE657	VCR sensitive B-ALL
GSE658	VCR resistant B-ALL
GSE659	DNR sensitive B-ALL
GSE974	Left ventricular apex samples
GSE982	Gene Expression-Based High Throughput Screening: HL-60 Cell Treatment with Candidate Compounds
GSE1133	tissue-specific pattern of mRNA expression
GSE1420	Barrett's esophagus, Barrett's-associated adenocarcinomas and normal esophageal epithelium
GSE1456	Gene expression of breast cancer tissue in a large population-based cohort of Swedish patients
GSE1577	T-ALL and T-lymphoblastic lymphoma
GSE1729	Gene expression profile of acute myeloid leukemia
GSE2034	Breast cancer relapse free survival
GSE2113	Plasma cell dyscrasias expression profiles associated with distinct IGH translocations in multiple myeloma
GSE2280	Prediction of lymphatic metastasis from primary squamous cell carcinoma of the oral cavity
GSE2328	Application of genome-wide expression analysis to human health & disease
GSE2351	chemotherapy cross-resistance and treatment response in childhood acute lymphoblastic leukemia
GSE2842	Additional systems to Prednisolone treated childhood ALL samples
GSE3218	Expression Profiling of Adult Male Germ Cell Tumors
GSE3218	Expression Profiling of Adult Male Germ Cell Tumors
GSE3284	A network-based analysis of systemic inflammation in humans
GSE3284	A network-based analysis of systemic inflammation in humans
GSE3307	Comparative profiling in 13 muscle disease groups
GSE3307	Comparative profiling in 13 muscle disease groups
GSE3526	Comparison of gene expression profiles across the normal human body
GSE3911	60 samples obtained at relapse
GSE4045	Classification of serrated colorectal tumors
GSE4127	Anticancer drug clustering in lung cancer based on gene expression profiles and sensitivity database
GSE4127	Anticancer drug clustering in lung cancer based on gene expression profiles and sensitivity database
GSE4183	Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature
GSE4183	Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature
GSE4271	Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
GSE4271	Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
GSE4475	A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
GSE4475	A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
GSE4885	Role of coactivator SRC-1/NcoA-1 for IL-6 target gene induction in HepG2 cells
GSE5090	PCOS patients vs control subjects
GSE5287	Prediction of response and survival following chemotherapy in patients with advanced bladder cancer
GSE5418	Gene Expression Analysis in Malaria Infection
GSE5462	Letrozole (Femara) early response to treatment
GSE5462	Letrozole (Femara) early response to treatment
GSE5580	Cell Specific Expression & Pathway Analyses Reveal Novel Alterations in Trauma-Related Human T-Cell & Monocyte Pathways
GSE5667	Transcription data from Normal Skin and Nonlesional and Lesional Atopic Dermatitis/Eczema Skin
GSE5667	Transcription data from Normal Skin and Nonlesional and Lesional Atopic Dermatitis/Eczema Skin
GSE5675	Pilocytic astrocytoma
GSE5787	Survey of Intra- and Inter-Tumour Heterogeneity of Gene Expression in Cervical Cancer
GSE5808	Changes in PBMC Gene Expression During Acute Measles
GSE5847	Tumor and stroma from breast by LCM
GSE5847	Tumor and stroma from breast by LCM
GSE6008	Human ovarian tumors and normal ovaries
GSE6008	Human ovarian tumors and normal ovaries
GSE6008	Human ovarian tumors and normal ovaries
GSE6011	Expression data from quadriceps muscle of young DMD patients and age matched controls
GSE6095	Diagnosis of Acute Lung Rejection by Gene Expression Profiling of Bronchoalveolar Lavage Cells
GSE6269	Gene expression patterns in blood leukocytes discriminate patients with acute infections
GSE6280	Expression data for normal and tumor kidneys
GSE6365	Distinct transcriptional and genetic features associated with chromosome 13 deletion in multiple myeloma
GSE6401	Up-regulation of translational machinery and distinct genetic subgroups characterize hyperdiploidy in multiple myeloma
GSE6477	Expression data from different stages of plasma cell neoplasm
GSE6477	Expression data from different stages of plasma cell neoplasm
GSE6596	Comparison of gene expression data from human and mouse breast cancers: Identification of conserved breast tumor genes
GSE6613	Parkinson's disease vs. controls, whole blood
GSE6740	Comparison of transcriptional profiles of CD4+ and CD8+ T cells from HIV-infected pateints and uninfected control group
GSE6764	Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma
GSE6914	Gene expression associated with gemcitabine resistance and its reversal by bexarotene
GSE6956	Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men
GSE7055	Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer
GSE7127	63 Melanoma cell lines
GSE7307	Human body index - transcriptional profiling
GSE7390	Strong Time Dependence of the 76-Gene Prognostic Signature
GSE7390	Strong Time Dependence of the 76-Gene Prognostic Signature
GSE7497	Influence of TGFbeta on human resting CD4+ T cells
GSE7638	Expression data from monocytes of individuals with different collateral flow index CFI
GSE7803	Human pre-invasive and invasive cervical squamous cell carcinomas and normal cervical epithelia
GSE7848	Effect of actein on the growth of the MDA-MB-453 breast cancer cell lines as a function of time and concentration.
GSE7894	Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants
GSE7895	Reversible and Permanent effects of Tobacco Smoke Exposure on Airway Epithelial Gene Expression
GSE7929	Gene Signature for Aggression of Melanoma Metastases - Melanoma Metastasis (LeiATCC)
GSE7956	Gene Signature for Aggression of Melanoma Metastases - Melanoma Metastasis (LeiFidler)
GSE8052	Genetic variants regulating ORMDL3 expression are determinants of susceptibility to childhood asthma
GSE8157	Gene expression profiling in skeletal muscle of PCOS after pioglitazone therapy
GSE8192	The DExH-box RNA helicase RHAU is a Nuclear Protein Involved in Transcription and mRNA Decay
GSE8218	Gene expression data from prostate cancer samples
GSE8218	Gene expression data from prostate cancer samples
GSE8332	Death receptor O-glycosylation controls tumor-cell sensitivity to the proapoptotic ligand Apo2L/TRAIL
GSE8397	Expression profiling of the Parkinsonian Brain
GSE8440	Expression data fromCongenital disorders of Glycosylation type-1 patients (CDG-I)
GSE8481	Various human cell types
GSE8581	Human Chronic Obstructive Pulmonary Disorder (COPD) Biomarker
GSE8650	Blood Leukocyte Microarrays to Diagnose Systemic Onset Juvenile Idiopathic Arthritis and Follow IL-1 blocade
GSE8658	PPARg regulated gene expression in human dendritic cells
GSE8658	PPARg regulated gene expression in human dendritic cells
GSE8658	PPARg regulated gene expression in human dendritic cells
GSE8835	Chronic lymphocytic leukemia cells induce changes in gene expression of CD4 and CD8 T cells.
GSE8921	Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response
GSE9006	Gene expression in PBMCs from children with diabetes
GSE9103	Skeletal Muscle Transcript Profiles in Trained or Sedentary Young and Old Subjects
GSE9166	Trovafloxacin-Induced Gene Expression Changes: Comparison of Primary Human Hepatocytes to HepG2 Cells
GSE9169	Gene expression during neuronal differentiation in two subtypes of SH-SY5Y
GSE9195	Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
GSE9195	Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
GSE9419	The skeletal muscle transcript profile reflects responses to inadequate protein intake in younger and older males
GSE9476	Abnormal Expression Changes in AML
GSE9676	Effects of sex and age on skeletal muscle gene expression in normal men and women
GSE9844	Transcriptomic Dissection of Tongue Squamous Cell Carcinoma
GSE9874	Expression profiles of human macrophages
GSE9891	Expression profile of 285 ovarian tumour samples
GSE9936	Expression data from human breast cancer cells (MCF-7) coexpressing ERalpha and Erbeta, treated with phytoestrogens
GSE9971	CYP3A5 Gene Expression is Associated with Early Recurrence of Non-small Cell Lung Cancer
GSE10063	Effects of tobacco smoke on gene expression and cellular pathways in a cellular model of oral leukoplakia
GSE10172	Molecular profiling of pediatric mature B-cell lymphoma treated in population-based prospective clinical trials
GSE10172	Molecular profiling of pediatric mature B-cell lymphoma treated in population-based prospective clinical trials
GSE10282	In-transit extremity melanoma I
GSE10325	Expression data from human peripheral blood subsets
GSE10325	Expression data from human peripheral blood subsets
GSE10327	mRNA expression data of 62 human medulloblastoma tumors
GSE10327	mRNA expression data of 62 human medulloblastoma tumors
GSE10358	Discovery and validation of expression data for the Genomics of Acute Myeloid Leukemia Program at Washington University
GSE10410	Triazole Antifungal Toxicogenomics: human_primary_hepatocytes_CellzDirect
GSE10445	MERLION LUNG CANCER STUDY
GSE10445	MERLION LUNG CANCER STUDY
GSE10474	Microarray Analysis of Acute Lung Injury
GSE10592	Differential gene expression from azithromycin and SMM treated human airway epithelium
GSE10792	Genome wide genotyping and gene expression data of childhood B-cell precursor ALL without known genetic aberrations
GSE10843	mRNA Cancer Cell Line Profiles
GSE10846	Prediction of survival in diffuse large B cell lymphoma treated with chemotherapy plus Rituximab
GSE10846	Prediction of survival in diffuse large B cell lymphoma treated with chemotherapy plus Rituximab
GSE10911	Expression data from MCF-7aro aromatase inhibitor-resistant, tamoxifen-resistant and LTEDaro lines.
GSE10911	Expression data from MCF-7aro aromatase inhibitor-resistant, tamoxifen-resistant and LTEDaro lines.
GSE11083	Childhood Onset Rheumatic Disease Gene Expression Profile
GSE11166	Local regulation and clinical impact of complement gene expression in deceased and living donor kidney allografts
GSE11190	Interferon signaling and treatment outcome in chronic hepatitis C
GSE11318	Molecular subtypes of DLBCL have distinct chromosomal aberrations
GSE11342	Gene expression of Peg-interferon alfa-2b plus ribavirin in hepatitis C patients during the first 10 weeks of treatment
GSE11482	Rhabdoid Tumor: Gene Expression Clues to Pathogenesis and Potential Therapeutic Targets
GSE11869	The genomic response of a human uterine endometrial adenocarcinoma cell line to 17alpha-ethynyl estradiol.
GSE11869	The genomic response of a human uterine endometrial adenocarcinoma cell line to 17alpha-ethynyl estradiol.
GSE11877	Children's Oncology Group Study 9906 for High-Risk Pediatric ALL
GSE11877	Children's Oncology Group Study 9906 for High-Risk Pediatric ALL
GSE11903	Effective treatment of psoriasis with etanercept is linked to suppression of IL17 signaling, not immediate response TNF
GSE11917	Vitamin D sterol effects on coronary ASMC genes
GSE12079	Molecular profiling of CD3- CD4+ T-cells from patients with the lymphocytic variant of hypereosinophilic syndrome
GSE12093	The 76-gene Signature Defines High-Risk Patients that Benefit from Adjuvant Tamoxifen Therapy
GSE12102	Overcoming resistance to conventional drugs in Ewing's sarcoma and identification of molecular predictors of outcome.
GSE12172	Common activation of RAS_MAPK pathway in serous LMP tumours
GSE12195	Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195	Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195	Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195	Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195	Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12237	Genes that mediate breast cancer metastasis to the brain
GSE12288	Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease
GSE12355	Detection of Notch1-IC, Notch2-IC and EBNA2 target genes in human B cells
GSE12408	Defective Cohesin in CdLS Mediates Gene Expression with Characteristics of Transcription Factor and Insulator Activity
GSE12408	Defective Cohesin in CdLS Mediates Gene Expression with Characteristics of Transcription Factor and Insulator Activity
GSE12417	Prognostic gene signature for normal karyotype AML
GSE12460	Expression profiling of neuroblastic tumors
GSE12627	Non-supervised hierarchical clustering of gene expression data
GSE12662	Normal human bone marrow CD34+ cells, promyelocytes, and neutrophils and PR9 cell line PML-RARA induction time course
GSE12667	Discovery of somatic mutations in lung adenocarcinomas
GSE12777	Gene expression profiling of 51 human breast cancer cell lines
GSE12777	Gene expression profiling of 51 human breast cancer cell lines
GSE12868	ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes
GSE12939	Global gene expression changes including drug metabolism and disposition induced by three-dimensional culture of HepG2
GSE12992	Beta-catenin status in pediatric medulloblastomas
GSE12995	Expression data for diagnosis acute lymphoblastic leukemia samples
GSE13009	MCF7 EGF, HRG stimulation
GSE13009	MCF7 EGF, HRG stimulation
GSE13041	Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age
GSE13294	Expression data from primary colorectal cancers
GSE13314	Gene expression profiling of pulmonary MALT lymphoma
GSE13351	Expression data from ALL samples for patients included in the Dutch Childhood Oncology Group
GSE13351	Expression data from ALL samples for patients included in the Dutch Childhood Oncology Group
GSE13351	Expression data from ALL samples for patients included in the Dutch Childhood Oncology Group
GSE13355	Gene expression data of skin from psoriatic patients and normal controls
GSE13355	Gene expression data of skin from psoriatic patients and normal controls
GSE13367	Genome-wide gene expression analysis of mucosal colonic biopsies and isolated colonocytes...
GSE13425	Expression data from ALL patients included in the set used to construct a classification signature (COALL cohort)
GSE13506	Galanin preproprotein is associated with elevated plasma triglycerides
GSE13548	Expression data from human cancer cells treated with UPR modulators under ER stress conditions
GSE13591	Integrated genomics approach to detect allelic imbalances in multiple myeloma
GSE13760	Gene expression profiling in arterial tissue from type 2 diabetic patients
GSE13760	Gene expression profiling in arterial tissue from type 2 diabetic patients
GSE13811	Analysis of gene expression response of CLL cells to co-culture with Nurse like cells
GSE13911	Expression data from primary gastric tumors (MSI and MSS) and adjacent normal samples
GSE13933	Trachea Epithelium as a "Canary" for Cigarette Smoking-induced Biologic Phenotype of Small Airway Epithelium
GSE13996	Molecular profiling of classical Hodgkin's lymphoma tissues
GSE14018	Metastases of breast cancer (U133A)
GSE14018	Metastases of breast cancer (U133A)
GSE14034	Alterations in Gene Expression in Human Mesothelial Cells Correlate with Mineral Pathogenicity
GSE14062	MLL rearrangements in pediatric ALL and AML: MLL specific and lineage specific signatures
GSE14209	Dysregulated genes associated with acquired resistance
GSE14315	Effects of demethylation on lung cancer cell lines
GSE14323	RMA expression data for liver samples from subjects with HCV, HCV-HCC, or normal liver
GSE14333	Expression data from 290 primary colorectal cancers
GSE14383	Effects of chronic exposure of human bronchial epithelial cells to low doses of cigarette smoke condensate
GSE14615	Microarray analyses of induction failure in T-ALL (COG study 9404)
GSE14615	Microarray analyses of induction failure in T-ALL (COG study 9404)
GSE14671	EXPRESSION SIGNATURE TO PREDICT MAJOR CYTOGENETIC RESPONSE IN CHRONIC PHASE CML PATIENTS TREATED WITH IMATINIB
GSE14671	EXPRESSION SIGNATURE TO PREDICT MAJOR CYTOGENETIC RESPONSE IN CHRONIC PHASE CML PATIENTS TREATED WITH IMATINIB
GSE14805	Transcript expression data from glioblastoma subcutaneous xenografts and non-neoplastic control brain
GSE14828	FGF-2 ENHANCES PROLIFERATION AND DELAYS LOSS OF CHONDROGENIC POTENTIAL IN HUMAN ADULT BONE MARROW-DERIVED MSCs
GSE14858	Gene exprssion profile classification predicts clinical outcome in juvenile myelomonocytic leukemia
GSE14880	Differentation in neuroblastomas
GSE14905	Type I Interferon: Potential Therapeutic Target for Psoriasis?
GSE14924	Characterisation of gene expression changes in T cells from patients presenting with AML compared with healthy T cells
GSE14926	Analysis of the impact of the method of cell selection on the gene expression profile of human CD4 and CD8 T cells
GSE14934	Gene expression profiles of Ras mutants.
GSE14994	Patterns of gene expression and copy-number alterations in VHL disease-associated and sporadic ccRCC
GSE15258	Whole blood transcript profiling of rheumatoid arthritis patients
GSE15434	Gene expression profiling in AML with normal karyotype: A multicenter study investigating molecular markers in 251 cases
GSE15471	Whole-Tissue Gene Expression Study of Pancreatic Ductal Adenocarcinoma
GSE15490	Sequential gene expression profiling in CLL during treatment
GSE15641	Gene signatures of progression and metastasis in renal cell cancer
GSE15695	Comprehensive Homozygous Deletion Mapping of Myeloma Defines a Poor Prognosis Cell Death Gene Expression Signature
GSE15695	Comprehensive Homozygous Deletion Mapping of Myeloma Defines a Poor Prognosis Cell Death Gene Expression Signature
GSE15695	Comprehensive Homozygous Deletion Mapping of Myeloma Defines a Poor Prognosis Cell Death Gene Expression Signature
GSE15765	Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma
GSE15765	Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma
GSE15777	Spontaneous regression of chronic lymphocytic leukemia: clinical and biological features of 9 cases
GSE15913	Thalidomide Exerts Distinct Molecular Antileukemic Effects
GSE15935	Expression data from 'naive' and HVC-replicon containing Huh7 cells (Clone A cells)
GSE16015	AML with mutated NPM1 carrying a normal or aberrant karyotype show overlapping features
GSE16020	Patients affected with autosomal dominant monocytopenia with increased susceptibility to mycobacterial infection
GSE16059	Gene Expression in Peripheral Blood Leucocytes in Monozygotic Twins Discordant for Chronic Fatigue
GSE16129	Enhanced Monocyte Response & Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections
GSE16131	Differences Between Follicular Lymphoma With and Without Translocation t(14;18)
GSE16214	Expression data from relapsing-remitting MS samples
GSE16214	Expression data from relapsing-remitting MS samples
GSE16214	Expression data from relapsing-remitting MS samples
GSE16237	Expression data of human neuroblastoma tissue samples
GSE16391	GGI: a potential predictor of relapse for endocrine-treated breast cancer patients in the BIG 1-98 trial
GSE16476	Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16476	Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16476	Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16476	Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16515	Expression data from Mayo Clinic Pancreatic Tumor and Normal samples
GSE16581	Genomic landscape of meningiomas: gene expression
GSE16677	Gene expression profiling of Down Syndrome (DS)-AMKL and non-DS AMKL samples
GSE17025	Gene Expression Analysis of Stage I Endometrial Cancers
GSE17032	Expression data from human fibroblasts
GSE17183	Hepatic gene expression before and during interferon and ribavirin combination therapy
GSE17195	Germline genomic variations associated with childhood acute lymphoblastic leukemia
GSE17306	Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling
GSE17356	Expression data from prostate cancer epithelial cells from African American and European American men
GSE17459	Down's syndrome with acute lymphoblastic pediatric leukemia (DS-ALL)
GSE17475	Expression data from lung adenocarcinoma
GSE17536	Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples)
GSE17536	Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples)
GSE17700	Factorial study for evaluating the effect of Affy platform and lab on gene expression measurements
GSE17703	Bone marrow gene expression of pediatric acute lymphoblastic leukemia (ALL)
GSE17800	Myocardial gene expression profiles and cardiodepressant autoantibodies predict response of patients with dilated cardiomyopathy to immunoadsorption therapy
GSE17855	Expression data from pediatric AML patients
GSE17855	Expression data from pediatric AML patients
GSE17920	Expression data of diagnostic biopsy samples from Hodgkin lymphoma patients
GSE17951	Gene expression analysis of prostate cancer samples using Affymetrix U133Plus2 array
GSE17951	Gene expression analysis of prostate cancer samples using Affymetrix U133Plus2 array
GSE17967	RMA expression data for liver samples from subjects with HCV cirrhosis with and without concomitant HCC
GSE18005	Human colorectal cancer cell lines treated with several inhibitors of PI3Kinase - AKT signaling pathway
GSE18018	Multilineage dysplasia and AML with mutated nucleophosmin
GSE18088	Correlation of molecular profiles and clinical outcome of stage UICC II colon cancer patients
GSE18206	Analysis of human in vivo irritated epidermis: differential profiles induced by sodium lauryl sulphate and nonanoic acid
GSE18323	Expression data from a malaria vaccine trial (HG-U133A2.0 and U133 Plus 2.0)
GSE18497	Diagnosis-relapse in ALL
GSE18670	Pancreatic cancer circulating tumor cells express a cell motility gene signature that predicts survival after surgery
GSE18674	Gene expression profile of Human tissues and cells
GSE18723	Gene Expression Circulating B Lymphocytes for Smoking Females
GSE18791	Antiviral response dictated by choreographed cascade of transcription factors
GSE18842	Gene expression analysis of human lung cancer and control samples
GSE18995	Expression data from donor lungs of cardiac death and brain death donors
GSE19143	Gene expression data from children diagnosed with ALL in vitro sensitive or resistant to prednisolone
GSE19147	CD3+ T-cells of B-cell chronic lymphocytic leukemia
GSE19188	Expression data for early stage NSCLC
GSE19234	Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival.
GSE19246	A novel method of amplification of FFPET derived-RNA enables accurate disease classification with microarrays
GSE19301	Gene Expression Patterns in Peripheral Blood Mononuclear Cells Associated with Asthma Exacerbation Attack
GSE19314	Sarcoidosis-specific markers from whole blood gene expression
GSE19314	Sarcoidosis-specific markers from whole blood gene expression
GSE19475	Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19475	Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19475	Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19475	Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19577	MLL partner genes confer distinct biological and clinical signatures of pediatric AML, an AIEOP study
GSE19804	Genome-wide screening of transcriptional modulation in non-smoking female lung cancer in Taiwan
GSE20181	Letrozole (Femara) early and late responses to treatment
GSE20181	Letrozole (Femara) early and late responses to treatment
GSE20196	Gene expression profile of poorly differentiated synovial sarcoma
GSE20559	Gene expression signature reflects differentiation differences rather than telomere maintenance mechanism
GSE20711	Epigenetic portraits of human breast cancers (expression data)
GSE20910	Expression data from Down syndrome and non-Down syndrome pediatric acute lymphoblastic leukemia cases
GSE21029	The lymph node microenvironment promotes B-cell receptor signaling, NF-κB activation, and tumor proliferation in chronic lymphocytic leukemia (CLL)
GSE21122	Whole-transcript expression data for soft-tissue sarcoma tumors and control normal fat specimens
GSE21452	Integrated genomic profiling in mantle cell lymphoma
GSE21477	Gene Expression Changes in Primary Human Nasal Epithelial Cells exposed to Formaldehyde in vitro
GSE21589	The Relationship between Virus Replication and Host Gene Expression in Lymphatic Tissue during HIV-1 Infection
GSE21610	Gene expression analysis in non-failing and failing myocardium pre and post pulsatile and non-pulsatile VAD support
GSE22056	High VEGFC expression is associated with unique gene expression profiles and predicts adverse prognosis in pediatric and adult acute myeloid leukemia.
GSE22083	Expression data from human skin exposed to solar-simulated radiation with or without sunscreen
GSE22224	Comparative Transcriptional and Phenotypic Peripheral Blood Analysis of Kidney Recipients under Cyclosporin A or Sirolimus Monotherapy
GSE22356	Altered immune phenotype in peripheral blood cells of patients with scleroderma-associated pulmonary hypertension
GSE22470	Translocations Activating IRF4 Identify a Subtype of Germinal-Center-Derived B-cell Lymphoma Affecting Predominantly Children and Young Adults
GSE22470	Translocations Activating IRF4 Identify a Subtype of Germinal-Center-Derived B-cell Lymphoma Affecting Predominantly Children and Young Adults
GSE22470	Translocations Activating IRF4 Identify a Subtype of Germinal-Center-Derived B-cell Lymphoma Affecting Predominantly Children and Young Adults
GSE22541	Expression data from pulmonary metastases and primary tumors of clear-cell renal cell carcinoma (ccRCC) with different disease-free survivals
GSE22573	Organotpyic Human Epithelial Neoplasia
GSE22707	Absence of significant overlap in transcriptional patterns between operationallytolerant liver and kidney recipients
GSE22762	An eight-gene expression signature for the prediction of survival and time to treatment in chronic lymphocytic leukemia
GSE22762	An eight-gene expression signature for the prediction of survival and time to treatment in chronic lymphocytic leukemia
GSE22762	An eight-gene expression signature for the prediction of survival and time to treatment in chronic lymphocytic leukemia
GSE22886	Expression profiles from a variety of resting and activated human immune cells
GSE23038	Normal prostate cells were immortalized and cultured for 650 days till several transformation hallmarks were observed
GSE23038	Normal prostate cells were immortalized and cultured for 650 days till several transformation hallmarks were observed
GSE23120	Basal gene expression data from Human Variation Panel
GSE23120	Basal gene expression data from Human Variation Panel
GSE23120	Basal gene expression data from Human Variation Panel
GSE23120	Basal gene expression data from Human Variation Panel
GSE23120	Basal gene expression data from Human Variation Panel
GSE23120	Basal gene expression data from Human Variation Panel
GSE23120	Basal gene expression data from Human Variation Panel
GSE23293	Definition and characterization of the systemic T cell dysregulation in untreated indolent B cell lymphoma and very early CLL
GSE23553	Gene expression changes with induction of in-vitro platinum-resistance in ovarian cancer cell lines.
GSE23806	Expression data of glioblastoma stem-like (GS) cell lines, conventional glioma cell lines and primary tumors
GSE23806	Expression data of glioblastoma stem-like (GS) cell lines, conventional glioma cell lines and primary tumors
GSE23806	Expression data of glioblastoma stem-like (GS) cell lines, conventional glioma cell lines and primary tumors
GSE23988	Expression data from breast cancer FNA biopsies from patients (US samples)
GSE24187	Atorvastatin, rosuvastatin and rifampicin effect on human primary hepatocyte transcriptome [Affymetrix platform]
GSE24427	Expression data of multiple sclerosis patients receiving subcutaneous Interferon-beta-1b therapy [U133 A and B]
GSE24427	Expression data of multiple sclerosis patients receiving subcutaneous Interferon-beta-1b therapy [U133 A and B]
GSE24514	Expression data from human MSI colorectal cancer and normal colonic mucosa
GSE24742	Effects of Rituximab on global gene expression profiles in the RA synovium
GSE24870	Gene expression profiling of CD34+ subsets in Multiple Myeloma and healthy individuals
GSE25429	Gene expression profiles of primary cultured ovarian cells and ovarian cancer cell lines in the presence and absence of a DNA methyltransferase inhibitor
GSE25550	t(11;18)-positive vs. t(11;18)-negative MALT lymphoma
GSE25550	t(11;18)-positive vs. t(11;18)-negative MALT lymphoma
GSE25571	Expression analysis of genes located in the minimally deleted regions of 13q14 and 11q22-23 in chronic lymphocytic leukemia - unexpected expression pattern of the RHO GTPase activator ARHGAP20
GSE25613	A Novel Pro-Survival Function of Cyclin-D1 Underlies Its Oncogenic Role and Potential as a Therapeutic Target in Human and Murine Mantle Cell Lymphoma
GSE25941	Effects of age on the skeletal muscle transcriptome
GSE26281	Integrated Genetic and Epigenetic Analysis of Childhood Acute Lymphoblastic Leukemia Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype
GSE26344	In vitro models of glioblastoma (GBM)
GSE26366	Notch/HES1-mediated PARP1 activation: A cell-type specific mechanism for tumor suppression
GSE26511	Involvement of the TGF-β and β-catenin pathways in pelvic lymph node metastasis in early stage cervical cancer
GSE26549	Gene Expression Profiling Predicts the Development of Oral Cancer
GSE26622	MOLECULAR CHARACTERIZATION OF LIVER ALLOGRAFTS FROM OPERATIONALLY TOLERANT TRANSPLANT RECIPIENTS (Affymetrix)
GSE26682	MRE11 Deficiency Increases Sensitivity to Poly(ADP-ribose) Polymerase Inhibition in Microsatellite Unstable Colorectal Cancers.
GSE26682	MRE11 Deficiency Increases Sensitivity to Poly(ADP-ribose) Polymerase Inhibition in Microsatellite Unstable Colorectal Cancers.
GSE26682	MRE11 Deficiency Increases Sensitivity to Poly(ADP-ribose) Polymerase Inhibition in Microsatellite Unstable Colorectal Cancers.
GSE26713	Integrated transcript and genome analyses reveal NKX2-1 and MEF2C as potential oncogenes in T-ALL
GSE26869	Regulation of myogenic progenitor proliferation in human fetal skeletal muscle by BMP4 and its antagonist Gremlin.
GSE26886	Gene expression profiling of Barrett's esophagus, adenocarcinoma, esophageal squamous epithelium and squamous cell carcinoma
GSE26971	Affymetrix data for training of Endopredict algorithm
GSE27041	OXPHOS complex I deficiency leads to transcriptional changes of the Nrf2-Keap1 pathway and selenoproteins.
GSE27155	Human thyroid adenomas, carcinomas, and normals
GSE27155	Human thyroid adenomas, carcinomas, and normals
GSE27263	Assessment of genotoxic effects and changes in gene expression in humans exposed to formaldehyde by inhalation under controlled conditions
GSE27389	Substitutions in the KRas oncogene determine protein behavior: Implications for signaling and clinical outcome.
GSE27651	The Anterior Gradient Homolog 3 (AGR3) Gene Is Associated with Differentiation and Survival in Ovarian Cancer
GSE28044	Expression data from non-malignant fallopian tube epithelium
GSE28392	Effects of resistance exercise on the transcriptome in MHC I and MHC IIa muscle fibers of young and old women
GSE28497	New markers for minimal residual disease detection in acute lymphoblastic leukemia
GSE28571	Gene Copy Number Aberrations are Associated with Survival in Histological Subgroups of Non-Small Cell Lung Cancer (expression data)
GSE28691	Characterization of an Oxaliplatin Sensitivity Predictor in a preclinical Murine Model of Colorectal Cancer
GSE28702	CRC samples for FOLFOX therapy prediction
GSE28796	Gene expression profiles of pretreatment biopsies from dose-dense-docetaxel-treated breast cancers
GSE28821	Laser-capture microdissected invasive micropapillary carcinomas of the breast
GSE28995	THP-1 cell study: RA and TNF Treatments; RA time course
GSE29001	Identification of Unique Therapeutic Targets in Esophageal Squamous Cell Carcinoma
GSE29023	Predict cytogenetic abnormalities with gene expression profiles
GSE29175	Expression data from ovarian cancer cell lines
GSE29354	Mesothelioma tumor gene expression profiles
GSE29570	The mtDNA Amerindian Haplogroup B2 enhances the risk for Cervical Cancer of HPV: de-regulation of mitochondrial genes may be involved.
GSE29683	Coexpression of Normally Incompatible Developmental Pathways in Retinoblastoma Genesis [human tumor/cell line data]
GSE29718	An early inflammatory gene profile in visceral adipose tissue in children
GSE29721	The landscape of promoter DNA hypomethylation in liver cancer (expression data)
GSE29908	Expression data from peripheral blood mononuclear cell in patients with type 1 diabetes before and after peripheral stem cell transplantation
GSE29986	gene expression analyses of pediatriclymphoblastic lymphomas and leukemias
GSE30074	Expression data from 30 medulloblastomas
GSE30161	Genomic Multivariate Predictors of Response to Adjuvant Chemotherapy in Ovarian Carcinoma: Predicting Platinum Resistance
GSE30240	Expression data from 5 human cell lines exposed to IR (5 Gy)
GSE30442	Whole-exome sequencing identifies mutations of BCOR in acute myeloid leukemia with normal karyotype
GSE30723	Gene Expression Profiles of human primary alveolar type II (ATII) cells and macrophages (AMs) after influenza virus infection
GSE30784	Gene expression profiling of oral squamous cell carcinoma (OSCC)
GSE30903	Expression data from untreated and ATP treated AML blasts
GSE30929	Whole-transcript expression data for liposarcoma
GSE30979	Gene expression in hypoxic non-small cell lung cancer
GSE31312	Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312	Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312	Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312	Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312	Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312	Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31348	Tuberculosis Patients Blood Gene Expression Through Treatment
GSE31403	Clinically Relevant Subsets Identified by Gene Expression Patterns Support a Revised Ontogenic Model of Wilms Tumor: A Children's Oncology Group Study
GSE31504	Impact of Gene Expression Profiling Based Risk Stratification in Patients with Myeloma Receiving Initial Therapy with Lenalidomide and Dexamethasone
GSE31534	Gene expression profile in A375 melanoma cells after 45 functionally important molecules were knocked down using siRNA
GSE31620	MicroRNA-1 is a candidate tumor suppressor and prognostic marker
GSE31684	Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer
GSE31684	Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer
GSE31773	Comparison of mRNA expression in circulating T-cells from patients with severe asthma
GSE31912	Gene expression profile in MCF7 breast cancer cells after 78 functionallly important molecules were knocked down using siRNA.
GSE32448	CPDR tumor-benign 80 genechip dataset
GSE32474	Comparison between cell lines from 9 different cancer tissue (NCI-60) (Affymetrix U133 Plus 2.0)
GSE32474	Comparison between cell lines from 9 different cancer tissue (NCI-60) (Affymetrix U133 Plus 2.0)
GSE32607	Human lymphocyte activation during the G0 to G1 transition
GSE32646	GSTP1 expression predicts poor pathological complete response to neoadjuvant chemotherapy in ER-negative breast cancer
GSE32901	Expression data for effector T cells
GSE32962	In vitro prednisolone resistance signature in MLL-rearranged infant ALL
GSE33109	Gene expression changes in human neural cells exposed to VX (O-ethyl S-[2-(diisopropylamino)ethyl] methylphosphonothiolate)
GSE33113	AMC colon cancer AJCCII
GSE33113	AMC colon cancer AJCCII
GSE33458	Gene expression analysis of osteosarcoma tumor-initiating cells (High) vs bulk tumor cells (Low)
GSE34171	Integrative Analysis of a series of newly diagnosed Diffuse Large B-cell Lymphomas (DLBCLs)
GSE34171	Integrative Analysis of a series of newly diagnosed Diffuse Large B-cell Lymphomas (DLBCLs)
GSE34205	Transcriptional profile of PBMCs in patients with acute RSV or Influenza infection
GSE34211	Pfizer Molecular Profile Data for Cell Lines
GSE34211	Pfizer Molecular Profile Data for Cell Lines
GSE34607	Airborne particulate matter affects gene expression in BEAS-2B bronchial epithelial cells.
GSE34620	Expression profiling of Ewing sarcoma samples
GSE34670	Gene expression in pediatric cALL
GSE34733	Methylation of the Proximal, Distal and Core Promoter of CEBPA in 572 Cases with Normal Karyotpye AML and 44 with t(8;21) Disclosed Different Frequencies but no Impact on Prognosis
GSE34860	Gene expression profiling in acute myeloid leukemia with mutated NPM
GSE35287	Unique Transcriptome, Pathways, and Networks in the Human Endometrial Fibroblast Response to Progesterone in Endometriosis
GSE35493	Pediatric rhabdoid tumors of kidney and brain show many differences in gene expression but share dysregulation of cell cycle and epigenetic effector genes
GSE35896	Gene expression data from 62 colorectal cancers
GSE36245	Gene expression data from glioblastoma tumor samples
GSE36701	Gene expression analysis of rectal mucosa in chronic irritable bowel syndrome (IBS) compared to healthy volunteers (HV)
GSE36771	Expression data from primary breast tumors (Auckland)
GSE36772	Expression data from primary breast tumors (NUH)
GSE36773	Expression data from primary breast tumors (IJB+OXF)
GSE36824	Clonal competition with alternating dominance in multiple myeloma [GEP]
GSE36824	Clonal competition with alternating dominance in multiple myeloma [GEP]
GSE36895	Molecular Genetic Classification of clear-cell Renal Cell Carcinoma (ccRCC) based on the Gene Expression Profiling of Tumors and Tumorgrafts deficient for BAP1 or PBRM1
GSE37088	Follicular Lymphoma expression array
GSE37200	Gene expression profiling of Barrett's esophageal tissues and esophageal adenocarcinoma specimens
GSE37201	Gene expression profiling of esophageal adenocarcinoma
GSE37307	Aberrant expressed genes in AML
GSE37364	Expression data from human colonic biopsy samples(adenoma-carcinoma)
GSE37371	Expression data from Ewing's sarcoma tumor samples
GSE37418	Novel mutations target distinct subgroups of medulloblastoma.
GSE37567	Methodoligies for identifying lead toxicity
GSE38351	The multifaceted balance of TNF-a and type I / II interferon responses in SLE and RA: how monocytes manage the impact of cytokines
GSE38351	The multifaceted balance of TNF-a and type I / II interferon responses in SLE and RA: how monocytes manage the impact of cytokines
GSE38627	Thalidomide in Total Therapy 2 Overcomes Inferior Prognosis of Myeloma with Low Expression of the Glucocorticoid Receptor Gene NR3C1
GSE38885	Expression data from post-transplant lymphoproliferative disorder (PTLD) patient samples
GSE39088	Down-regulation of Interferon signature in systemic lupus erythematosus patients by active immunization with Interferon alpha-Kinoid
GSE39204	Gene-expression profiles of ascites-cytology-positive ovarian cancer
GSE39411	Expression data from healthy and malignant (chronic lymphocytic leukemia, CLL) human B-lymphocytes after B-cell receptor stimulation
GSE39454	Genomic signatures characterize leukocyte infiltration in myositis muscles
GSE39612	Distinct gene expression profiles of viral- and non-viral associated Merkel cell carcinoma revealed by transcriptome analysis
GSE39671	Expression data from untreated CLL patients
GSE39976	Determination of molecular markers for BRCA1 and BRCA2 heterozygosity using gene expression profiling
GSE40182	Culturing Cytotrophoblasts Reverses Gene Dysregulation in Preeclampsia Revealing Possible Causes
GSE40231	The Stockholm Atherosclerosis Gene Expression (STAGE) study: Global Gene Expression data from coronary and carotid artery disease patients
GSE40263	Novel antioxidative peptides with potential to reduce psoriatic changes in PBMCs
GSE41445	Basal gene expression data of 21 cell lines (18 cancer and 3 non-tumorigenic)
GSE42203	Global expression analysis of DLBCL and SMZL cell lines
GSE42743	Oral Cavity Cancer Compared to Adjacent Normal Tissue [Validation Set]
GSE42816	Gene expression propionic patients, carriers, and controls
GSE42822	Expression data from breast cancer FNA biopsies from patients ( (USO samples)
GSE43290	Expression data from meningiomas and normal meninges
GSE43553	Microarray-based gene expression profiling in patients with cryopyrin-associated periodic syndromes defines a disease-related signature and IL-1-responsive transcripts.

Mouse

GEO Acc.	Title
GSE1471	Cardiac muscle, comparisons of wild type and mdx mice, 8 week and 10.5 month (Porter lab)
GSE1479	C57BL/6 Benchmark Set for Early Cardiac Development
GSE3100	Cystic Fibrosis Mouse Lung Profiles
GSE3184	Murine Airway Hyperresponsiveness
GSE3203	Influenza virus infection-induced gene expression changes of regional B cells are mediated in part through type I IFN
GSE3414	Immune Response to Nippostrongylus brasiliensis in the mouse lung
GSE5037	zhang-affy-mouse-217286
GSE5130	Accurate and precise transcriptional profiles from 50 pg of total RNA or 100 flow-sorted primary lymphocytes
GSE5394	Gene Expression after Cochlear Removal in Cochlear Nucleus at P7 and P21
GSE5657	Effect of X-linked hypophosphatemia (the Hyp mutation) on gene expression in the mid-shaft of the mouse femur
GSE6453	Expression microarray analysis of pubertal mouse mammary gland development
GSE6509	Gene Profile of RU486 effect on LPS induced gene expression in CNS.
GSE7487	Gene profiling of pathological cardiac hypertrophy vs physiological hypertrophy
GSE7536	Microarray expression profiling of discrete microdissected mouse inner ear tissues from E9 to E15 at half-day intervals.
GSE7798	Osteoclastic estrogen receptor alpha mediates the osteoprotective estrogen action through Fas ligand signaling
GSE8396	Effect of Synthetic Dietary Triglycerides: a Novel Research Paradigm for Nutrigenomics
GSE8512	Expression data from mouse bone marrow macrophages from a strain intercross
GSE8836	CLL in Em-TCL1 mice provides a biologically relevant model to unravel and reverse immune deficiency in human cancer.
GSE8949	Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
GSE9355	Microarray expression profiles of mammary tumors developed in Wap-Cre;Etv6-NTRK3 mice
GSE9371	Estrogen receptors alpha and beta mediation of gene expression in mouse vascular tissue
GSE9533	PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression
GSE9563	Translation state array analysis of Mouse embryonic stem cells and embryoid bodies
GSE9785	Expression data from Newborn mice infected with Shigella flexneri
GSE9954	Large-scale analysis of the mouse transcriptome
GSE9975	newly transcribed RNA (nt-RNA) for IFN alpha and gamma time course
GSE10246	GNF Mouse GeneAtlas V3
GSE10493	Novartis 12 Strain Diet Sex Survey
GSE10627	Mll-AF9 induced changes in gene expression in various hematopoietic cells
GSE10744	Copy number variation and gene expression in the mouse
GSE11056	Expression data from mouse lung
GSE11494	Innate immune response of murine nasal-associated lymphoid tissue (NALT) to Streptococcus pyogenes infection.
GSE11662	GADD45a in ventilator-induced lung injury: role of Akt signaling
GSE11796	ligand-activated and -unactivated AHR in wiltype and mutant hepatoma cells
GSE12413	Prediction of left ventricle systolic dysfunction in mice using gene expression profiling
GSE12420	Gene profiling of heart atria in PI3K and Mst1 mouse models
GSE12730	Mouse gestational protein restriction: Newborn offspring liver and hindleg muscle
GSE12905	Foxl2 functions in sex determination and histogenesis throughout mouse ovary development, analyzed by Affymetrix arrays
GSE13302	Gene expression profiling in the lung and liver of Perfluorooctane sulfonate (PFOS) exposed mouse fetuses
GSE13379	Application of a translational profiling approach for the comparative analysis of CNS cell types.
GSE13443	Induction of systemic disease-specific salivary biomarker profiles in mouse cancer models
GSE13522	Transcriptional response in skin of mouse 24 hours after intradermal infection with Trypanosoma cruzi
GSE13873	Expression data from murine gastric epithelium
GSE14350	IL-2 dependent genes of T regulatory and T effector cells
GSE14499	Effect of BDNF on the APP transgenic mouse model of Alzheimer's disease
GSE14539	Chronic liver inflammation-induced double strand DNA breaks enhance hepatocarcinogenesis
GSE14810	Microarray data from murine C3H/10T1/2 and 3T3 L1 adipocytes
GSE14917	C/EBPa is required for pulmonary cytoprotection from hyperoxia injury
GSE14929	Myocardial expression data from gnotobiotic wild-type and Ppara-/- mice
GSE15129	Coenzyme Q10-dependent gene expression in SAMP1 mice tissues
GSE15401	Expression data from mouse aorta during and following transient hyperglycaemia
GSE15729	Gene Expression of ApoE Null and ApoE Null/RAGE Diabetic and Non-diabetic Mice
GSE15907	Immunological Genome Project data Phase 1
GSE16012	Gene expression profiles in Elastin (Eln+/-) mouse aorta and aortic valve tissue
GSE16361	Gene expression profiling of muscles from transgenic humanSODG93A mice at symptomatic stage
GSE16496	Expression profile of adult mouse 51 CNS regions
GSE16585	Expression profiling of P14 and P28 mouse retina from 4 genotypes: +/+, Rorb-/- , +/+;CrxpNrl and Rorb-/-;CrxpNrl
GSE16902	Expression data from mouse gastric tumor models
GSE16994	Microarray analysis of iris gene expression in mice with mutations influencing pigmentation
GSE17110	Gene expression data from P. gingivalis infected Mouse
GSE17438	Transcriptional profiling of 77 tissue samples from germ-free and conventionally raised mice.
GSE17478	Particulate Matter effect on Mouse Model of Cardiac Failure: Lung and Heart Left Ventricle
GSE17509	Reduced levels of protein tyrosine phosphatase CD45 protect mice from the lethal effects of Ebola virus infection
GSE17825	Murine fracture healing
GSE17864	mRNA profiling reveals divergent roles of PPARa and PPARÃŸ/d in regulating mouse liver gene expression (PPARb/d samples)
GSE18216	Non-targeted effects of low dose ionizing radiation act via TGFÎ² to promote mammary carcinogenesis
GSE18460	Lactobacillus acidophilus induces virus immune defense genes in murine dendritic cells by a TLR-2 dependent mechanism
GSE18614	Differential Regulation of Mitogen-Activated Protein Kinases by Acetaminophen in TAMH cells
GSE18740	Luteolin has anti-inflammatory and neurotrophic effects on microglia
GSE18858	Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set
GSE18859	Gene expression in the colon of DSS-treated Pglyrp1-/-, Pglyrp2-/-, Pglyrp3-/-, and Pglyrp4-/- mice
GSE18896	ERRÎ³ Regulates Cardiac, Gastric and Renal Potassium Homeostasis
GSE19137	Interferon response genes as immunopathogenic correlates of SARS coronavirus infection in mice (129/S6/SvEv)
GSE19322	Expression data from C57BL/6J and MRL/MpJ hearts following acute myocardial infarction
GSE19401	Expression data from murine follicular dendritic cells
GSE19499	Expression data from mouseT-cell lymphomas
GSE19675	Negative regulation of the IFN/STAT signaling pathway by the Trim24 tumor suppressor protein through Rara inhibition
GSE19793	MyD88-mediated signaling prevents development of adenocarcinomas of the colon via interleukin-18
GSE19855	Molecular Characterization of Treponema denticola infection-induced bone and soft tissue transcriptional profiles
GSE20389	Molecular Characterization of Tannerella forsythia infection-induced bone and soft tissue transcriptional profiles
GSE20465	Her2/Neu breast cancer mouse model whole tissue transcriptome
GSE20547	A53T-Î±-synuclein overexpression mouse model signaling and striatal synaptic plasticity
GSE20614	Gene expression profiling of mouse tumors arising from Keratin 6-positive mammary cells
GSE20621	Immunoregulatory actions of epithelial cell PPAR g at the colonic mucosa
GSE20684	The gene encoding the hematopoietic stem cell regulator CCN3 (NOV) is under direct cytokine control through the transcription factors STAT5a/b.
GSE21263	Network Analysis of Skin Tumor Progression Identifies a Rewired Genetic Architecture Affecting Inflammation and Tumor Susceptibility (papillomas)
GSE21419	Laser Capture Microdissection of Hyperlipidemic Mouse Aorta Atherosclerosis
GSE21716	Hepatic xenobiotic metabolizing enzyme gene expression through the life stages of the mouse
GSE22006	Medulloblastoma tumors derived from Ptch+/-p53-/- transgenic mouse allografted in nude mice
GSE22215	Early and Late gene expression responses to Salmonella infection in the mouse intestine
GSE22307	Expression data from mouse colon tissue response to DSS induction at day 0, 2, 4 and 6
GSE22506	Unacylated Ghrelin Rapidly Modulates Lipogenic and Insulin Signaling Pathway Gene Expression in Metabolically Active Tissues of GHSR Deleted Mice
GSE22871	Expression data from wild-type and PPARalpha-null mice exposed to perfluorooctane sulfonate (PFOS)
GSE22873	Ager (Rage) and Myd88 deletion in resected mouse livers
GSE23006	Transcriptional profiling of awound healing process in skin and oral mucosa
GSE23009	Effect of intra-cytoplasmic sperm injection (ICSI) on gene expression and development of mouse preimplantation embryos
GSE23182	Systemic inflammation modulates Fc receptor expression on microglia in chronic neurodegeneration
GSE23408	Global gene expression profiles and the progression of pro- and anti-inflammatory pathways in mouse models
GSE23780	A Novel Statistical Algorithm for Gene Expression Analysis Differentiates PXR-Dependent and Independent Mechanisms of Toxicity
GSE23938	Comprehensive genomic profiling identified miRNA signatures associated with mammary tumor differentiation and development
GSE24207	mRNA analysis in different mouse tissues
GSE24594	MMTV-Myc tumor development in E2F-null backgrounds
GSE24637	Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using TALLYHO x C57BL6 F2 mice
GSE24773	Expression data from WT, Crebbp+/- and Ep300+/- bone marrow stroma
GSE24873	IL-17-induced NF-kB activation via CIKS/Act1: Physiologic significance and signaling mechanisms
GSE24920	Gene Expression in Myotonic Dystrophy
GSE25029	Ionizing radiation in GI tract of Tweak KO mice
GSE25098	Rhabdomyosarcoma can be initiated in activated Pax7+ Muscle Progenitor Cells
GSE25123	PPARg and IL-4-induced gene expression data from PPARg +/- LysCre and PPARg fl/- LysCre mouse bone marrow-derived macrophages
GSE25306	Gene expression profiling of skeletal muscles treated with a soluble activin type IIB receptor
GSE25313	Effect of PDE4 inhibition on host gene expression of Mtb-infected mouse lungs.
GSE25488	Expression data from C3(1)Tag mammary tumors, tumor derived cell line (M6) and normal mammary tissue (FVB)
GSE25908	Distinct Protein Degradation Induced by Different Disuse Models of Skeletal Muscle Atrophy
GSE26147	Examination of inflammatory transcripts during a transfer model of type I diabetes.
GSE26299	Gene expression profiling in DBA/2J glaucoma
GSE26464	High Fat Diet Reduces the Expression of Glutathione Peroxidase 3 in Mouse Prostate
GSE26475	Microarray expression data from whole murine knee joints at early time points post surgery in the destabilization of medial meniscus (DMM) model of OA
GSE26671	Expression data of murine model of cardiac hypertrophy
GSE26830	Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (mRNA)
GSE27149	Expression data from murine vaginal samples following adjuvant treatment
GSE27546	Effects of HMGN variants on cellular transcription profile
GSE27715	Gene expression profiles of germ cells, supporting cells, interstitial cells (including steroidogenic precursors), and endothelial cells in the developing testis and ovary at 11.5, 12.5, and 13.5 dpc. (GUDMAP Series ID: 43)
GSE28559	An expression microarray approach for the identification of candidate metastable epialleles in the mouse genome
GSE29164	IL-12 induces myeloid cells in situ to cross-present antigen
GSE29285	C/EBPa Regulates Protease/anti-protease Balance and Mediates Bronchiolar Cell Recovery After Injury
GSE29632	Effect of Nrf2 deletion in postnatal lung development and BPD phenotype in newborn mice
GSE29670	Polymicrobial periodontal pathogens transcriptomes in calvarial bone and soft tissue
GSE29685	Coexpression of Normally Incompatible Developmental Pathways in Retinoblastoma Genesis [mouse model data]
GSE29897	Long non-coding RNAs regulate adipogenesis (Affymetrix)
GSE30457	Dissecting primary (translation independent) from secondary (translation dependent) IFN-mediated differential gene expression
GSE30971	The Histone Methyltransferase Wbp7 Controls Macrophage Function through GPI Glycolipid Anchor Synthesis. [Expression Profile]
GSE31115	Transcriptional profiling of 53 tissue samples from germ-free and conventionally raised mice
GSE31372	Misprocessing of APP and accumulation of Î²-Amyloid causes early alteration of pathways implicated in late-onset Alzheimer disease.
GSE31409	Lentiviral vector-based insertional mutagenesis identifies new clinically relevant cancer genes involved in the pathogenesis of hepatocellular carcinoma
GSE31561	Transcriptional analysis of organ-specific toxicity induced by a panPPAR agonist in mice: Identification of organ-specific toxicity biomarkers
GSE31995	Gene Expression data from Mouse Balb/c Bone marrow derived macrophages infected by the promastigote form of Leishmania major parasite (P) or Killed parasite (Kp) during a time course of infection [Balb/c]
GSE31996	Gene Expression data from Mouse C57bl6 Bone marrow derived macrophages infected by the promastigote form of Leishmania major parasite (P) or Killed parasite (Kp) during a time course of infection [C57bl6]
GSE32316	FGFR1 target genes in brown adipose tissues
GSE32423	Expression data from naive and memory CD8 T cells cultured in presence or absence of IL-4
GSE32500	Whole Genome Expression after Hypoxia andReoxygenation in the Newborn Mouse Lung, Brain and Eye
GSE32706	Comparative transcriptomics and metabolomic analysis of fenofibrate and fish oil treatments in mice
GSE32994	Oct4 and jhdm1b infected MEF with or without vitamin C treatment
GSE33085	Transcriptome analysis of adult retina cell types.
GSE33199	A mouse model of the most aggressive subgroup of human medulloblastoma [Mouse430_2]
GSE33549	Expression data from mouse T-cell lymphomas
GSE33726	The circadian clock coordinates ribosome biogenesis.
GSE33744	Cross-species transcriptional networks in Diabetic Glomerulopathy in mouse and man
GSE33931	Expression data from mouse muscle
GSE34071	Expression data of Normal versus Mutant MPS VII C3H mouse
GSE34078	Global gene expression profiling in mouse plasma cell tumor precursor and bystander cells revels potential intervention targets for plasma-cell neoplasia
GSE34723	Gene Expression Commons: an open platform for absolute gene expression profiling
GSE34773	Skeletal muscle PGC-1a mediates mitochondrial, but not metabolic, changes during calorie restriction.
GSE35077	A gene expression database for retinal neuron subtypes
GSE35243	Expression data from embryonic mouse pleuroperitoneal folds and diaphragms
GSE36074	Differential regulation of extracellular matrix constituents in myocardial remodeling with and without heart failure following pressure overload
GSE36806	Chronic TNBS Colitis in the FN14 KO Mouse
GSE36826	Neutrophil-derived IL-1Î² is sufficient for abscess formation in immunity against Staphylococcus aureus in mice
GSE36838	Expression profiling of the effect of high-fat diet, low-fat diet, CR and exercise on mice liver
GSE36888	Critical Role of STAT5 Transcription Factor Tetramerization for Cytokine Responses and Normal Immune Function (RNA)
GSE37000	The transcriptional landscape of hematopoietic stem cell ontogeny
GSE38048	E2F1 loss induces spontaneous tumour development in Rb-deficient epidermis
GSE38093	Diet-Induced Obesity Exacerbates Inflammatory and Oxidative Stress Responses in Mice Exposed to Cigarette Smoke
GSE38574	Gene expression data from Ldlr-/-, Apob100/100, Mttp flox/flox Mx1-Cre mice at different stages of atherosclerosis development
GSE38754	Temporal changes of gene expression in mouse heart, kidney and lung during juvenile growth
GSE38826	Cooperative and antagonistic roles for Irx3 and Irx5 in cardiac morphogenesis and postnatal physiology
GSE38952	Expression data from AJ and C3H mouse lungs exposed to NNK
GSE39304	Double-stranded RNA induces molecular and inflammatory signatures that are directly relevant to COPD
GSE39562	Immortalized clonal brown, beige and white adipose cell lines
GSE40151	Bleomycin induces molecular changes directly relevant to idiopathic pulmonary fibrosis:A model for â€œactiveâ€ disease.
GSE40439	Gene expression analysis of Ncor1 muscle-specific knockout and PGC-1alpha muscle-specific transgenic skeletal muscle
GSE40609	Murine PDAC cell lines
GSE40610	Expression data from a Charcot-Marie-Tooth 1B neuropathy mouse model
GSE40758	Transgenic EÂµ-myc mouse lymphoma expression data for test dataset [Mouse430A_2]
GSE40857	Expression data from mouse optic nerve head after optic nerve crush
GSE41438	Gestational Age-Dependent Changes in Gene Expression of Metabolic Enzymes and Transporters in Pregnant Mice
GSE41768	PTP1B deficiency effect on mammary gland development and differentiation
GSE42264	Hsp70 and a Novel Axis of Type 1 Interferon-Dependent Antiviral Immunity in the Measles Virus-Infected Brain
GSE42533	Her2/Neu tumorigenesis and metastasis is regulated by E2F transcription factors
GSE42742	Murine microenvironment metaprofiles associate with human cancer etiology and intrinsic subtypes
GSE42858	Progesterone receptor-dependent gene signatures in the mouse mammary gland after acute progesterone treatment
GSE42892	Microarray Analysis of a Familial Hypertrophic Cardiomyopathy Mouse Model Rescued by a Phospholamban Knockout
GSE43155	Expression profiling of wildtype mouse cornea in development, adult, and aging
GSE43373	Molecular and cellular response profiles induced by the TLR4 agonist-based adjuvant Glucopyranosyl Lipid A
GSE43775	Induction of the mouse germ cell fate by transcription factors in vitro [exp1]
GSE43961	Xist RNA is a potent suppressor of hematologic cancer in mice.
GSE43969	Reconstruction of the dynamic regulatory network that controls Th17 cell differentiation by systematic perturbation in primary cells (Affymetrix timecourse IL23 KO)
GSE44387	Transcriptomal profiling of C57BL/6 wild type and ER-alpha KO mice fetal mammary gland after fetal exposure to Bisphenol A (BPA) and 17alpha-ethynylestradiol (EE2)
GSE45051	Gene expression profile of liver from adult and neonatal Balb/c mice after listeriosis
GSE45365	Genome-wide expression study of the early/innate responses of murine B and T cells to MCMV infection
GSE45465	Dynamic changes in liver 5-hydroxymethylcytosine profiles upon non-genotoxic carcinogen exposure [Replicated control vs. pb treated study]
GSE45514	Treatment of established mouse AA with topical JAK inhibitors
GSE45551	Prevention of Mouse AA with IL-15 pathway inhibitors
GSE45577	Profiling of glycerol- and CTX-induced models of muscle regeneration in mice
GSE45592	Dicer deficiency reveals microRNAs predicted to control gene expression in developing adrenal cortex [array]
GSE46109	Dynamic Gene Expression Response to TGF-Î² Stimulation in Multipotent Progenitors and Common Dendritic Cell Progenitors
GSE46209	Non-telomeric role for Rap1 in regulating metabolism and protecting against obesity
GSE46298	Whole genome transcriptome analysis identifies indices of fast and slow disease progression in two ALS mouse models
GSE46568	Expression data from mouse liver tissue from SKH:QS mice treated with 68ZnO sunscreens
GSE46606	Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4 (expression)
GSE46889	Temporal Gene Expression Patterns in the skin of D6 null and wild type mice after inflammation with the chemical irritant TPA
GSE47546	Gene expression in whole lung and pulmonary macrophages reflects the dynamic pathology associated with airway surface dehydration [left lobe only]
GSE47550	mRNA expression data from whole trachea dissected from either wild-type mice or Scnn1b-Tg mice at post-natal days 0, 3, 10, and 42
GSE48564	Expression data from mammary tumors from a MOLF/Ei x PyMT mouse cross
GSE48565	Expression data from mammary tumors from a Diversity Outcross x PyMT mouse cross
GSE49383	Gene expression data from mouse HDAC4 KO pups, postnatal day 3
GSE50250	Expression data from vessels of differing embryonic origin
GSE50400	Suppression of molecular inflammatory pathways by Toll-like Receptor 7, 8, and 9 antagonists in a model of IL-23-induced skin inflammation
GSE50517	Shp2 Signaling Suppresses Senescence in PyMT-induced Mammary Gland Cancer in Mice [Mouse430_2 array]
GSE50789	Gene expression in mouse liver in response to short-term calorie restriction
GSE50794	GEMM CRC collection analysis
GSE51080	Expression data from exposure of BAT and WAT at 6 and 28 degrees C
GSE51285	Expression and Metabolic Profiles in a Panel of Five Neural Tube Defect Mouse Models
GSE51414	Expression data from oxaliplatin-treated tumors from mice pre-treated or not with antibiotics cocktail
GSE51432	Î²-Cryptoxanthin suppresses inflammatory gene expression in diet-induced nonalcoholic steatohepatitis in mice
GSE51483	Transcriptional Atlas of Cardiogenesis Maps Congenital Heart Disease Interactome
GSE51885	Liver mRNA microarray study for mice treated with various diets
GSE52333	Circadian Liver Gene Expression in Animals on Normal Chow or High Fat Diet
GSE52474	Late Multiple Organ Surge in Interferon-regulated Target Genes Characterizes Staphylococcal Enterotoxin B Lethality
GSE53131	Expression data from livers of C57BL/6J mice fed a high-fat diet and coffee
GSE53307	Expression data from multiple mouse adipose depots
GSE53607	Bioinformatics Multivariate Analysis Determined a Set of Phase-Specific Biomarker Candidates in a Novel Mouse Model for Viral Myocarditis
GSE54147	Pregnancy-associated alterations in DNA methylation patterns of mammary epithelial stem cells [reproductive stages]
GSE54217	Calcineurin signaling regulates neural induction through antagonizing the BMP pathway
GSE54498	Effect of Dot1l deletion on LSKs and GMPs
GSE54582	Transcriptomic analysis of mammary tumors from MMTV-ErbB2 transgenic mice
GSE54597	Dose-response modeling of early molecular and cellular key events in CAR-mediated hepatocarcinogenesis pathway
GSE54650	A circadian gene expression atlas in mammals assayed by microarray
GSE55084	Mouse liver transcription profiling by array
GSE55746	Transcriptional profiling of liver from wild type and PXR-null mice treated with PCN
GSE55756	Transcription profiling of mouse liver by array
GSE57034	BAC-trap studies of Purkinje cells in normal and FMR1 mutant mice
GSE58244	Role of Notch receptors in ozone induced lung injury in mice
GSE58484	Expression data from mus musculus subjected to traumatic brain injury (TBI) for treatment with cyclophosphamide
GSE58915	Changes of genes in time-dependent photoaged mouse model
GSE59336	Identification of odorant receptors activated by odorants in vivo
GSE59422	Effect of Hypertension of Dendritic Cell Gene Expression
GSE59437	Expression data from mouse tissue Angiotensin II treated for 0,1,3,7days
GSE59560	Molecular profiling of three tumor subtypes in Ptch medulloblastomas
GSE60088	Transcriptional Profilingin Sepsis-induced Experimental Multiple Organ Dysfunction Syndrome
GSE60149	Global hepatic transcript data from fasted male BXD strains on chow or high fat diet
GSE60780	Gene expression profiling in mice overexpressing human wild type (WT) keratin 8 (K8) or K8 variants (G62C and R341H).
GSE60856	Expression data of isolated motor neurons from SOD1 G93A mice, after G-CSF treatment
GSE61847	Inflammatory profile of NOD.Batf3-/- islets
GSE61937	Neuron-specific deletion of the miRNA-processing enzyme DICER induces severe but transient obesity in mice
GSE62635	Transcriptional responses of mouse adipocytes during insulin resistance
GSE63027	Expression data from GNMT and MAT1A knockout models that develop all the stages of non-alcoholic fatty liver disease including hepatocellular carcinoma [GNMT_MAT1A_3&8_months]
GSE64522	Expression data from mammary tumors from a generation 7 Diversity Outcross x PyMT cross
GSE65888	In vivo electroporation-based conditional oncogenic activation implicates multiple distinct cellular origins for Group3 medulloblastoma

Citation

COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH). Nucleic Acids Res., Volume 45, Issue D1, 4 Jan. 2017, Pages D389-D396.
PMID: 27679477 DOI: 10.1093/nar/gkw868

Contact

Insuk Lee (insuklee (at) yonsei.ac.kr)

Funding

This project was supported by the National Research Foundation of Korea grant
(2012M3A9B4028641, 2012M3A9C7050151, 2015R1A2A1A15055859).