Home Home Network Biology Lab

Overview

Massive amount of array-based transcriptomics data have been deposited in several public depositories such as Gene Expression Omnibus (GEO) and ArrayExpress. Recent advance of sequencing technology has enabled platform-independent transcriptomic profiling via RNA-seq, which grows size of public transcriptomics data ever increasing rate. Data mining system to extract functional hypotheses from these transcriptomics big data sources will provide new routes to human disease research. Coexpedia is a database of context-associated co-expression networks inferred from individual series of microarray samples for human and mouse of GEO.

Coexpedia is distinctive co-expression databases by the following three aspects.

  1. All co-expression links were evaluated for functional association by statistical assessment.
  2. All co-expression links are associated with particular biomedical contexts.
  3. All co-expression links have associated medical subject heading (MeSH) terms, which provide anatomical or disease context information.

GEO series dataset

Human
GEO Acc.Title
GSE473PGA Human CD4+ Lymphocytes
GSE635Identification of novel genomic determinants of cellular drug resistance in acute lymphoblastic leukemia.
GSE643ASP sensitive all ALL
GSE648VCR sensitive all ALL
GSE649VCR resistant all ALL
GSE650DNR sensitive all ALL
GSE653ASP sensitive B-ALL
GSE654ASP resistant B-ALL
GSE655PRED sensitive B-ALL
GSE657VCR sensitive B-ALL
GSE658VCR resistant B-ALL
GSE659DNR sensitive B-ALL
GSE974Left ventricular apex samples
GSE982Gene Expression-Based High Throughput Screening: HL-60 Cell Treatment with Candidate Compounds
GSE1133tissue-specific pattern of mRNA expression
GSE1420Barrett's esophagus, Barrett's-associated adenocarcinomas and normal esophageal epithelium
GSE1456Gene expression of breast cancer tissue in a large population-based cohort of Swedish patients
GSE1577T-ALL and T-lymphoblastic lymphoma
GSE1729Gene expression profile of acute myeloid leukemia
GSE2034Breast cancer relapse free survival
GSE2113Plasma cell dyscrasias expression profiles associated with distinct IGH translocations in multiple myeloma
GSE2280Prediction of lymphatic metastasis from primary squamous cell carcinoma of the oral cavity
GSE2328Application of genome-wide expression analysis to human health & disease
GSE2351chemotherapy cross-resistance and treatment response in childhood acute lymphoblastic leukemia
GSE2842Additional systems to Prednisolone treated childhood ALL samples
GSE3218Expression Profiling of Adult Male Germ Cell Tumors
GSE3218Expression Profiling of Adult Male Germ Cell Tumors
GSE3284A network-based analysis of systemic inflammation in humans
GSE3284A network-based analysis of systemic inflammation in humans
GSE3307Comparative profiling in 13 muscle disease groups
GSE3307Comparative profiling in 13 muscle disease groups
GSE3526Comparison of gene expression profiles across the normal human body
GSE391160 samples obtained at relapse
GSE4045Classification of serrated colorectal tumors
GSE4127Anticancer drug clustering in lung cancer based on gene expression profiles and sensitivity database
GSE4127Anticancer drug clustering in lung cancer based on gene expression profiles and sensitivity database
GSE4183Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature
GSE4183Inflammation, adenoma and cancer: objective classification of colon biopsy specimens with gene expression signature
GSE4271Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
GSE4271Molecular subclasses of high-grade glioma: prognosis, disease progression, and neurogenesis
GSE4475A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
GSE4475A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
GSE4885Role of coactivator SRC-1/NcoA-1 for IL-6 target gene induction in HepG2 cells
GSE5090PCOS patients vs control subjects
GSE5287Prediction of response and survival following chemotherapy in patients with advanced bladder cancer
GSE5418Gene Expression Analysis in Malaria Infection
GSE5462Letrozole (Femara) early response to treatment
GSE5462Letrozole (Femara) early response to treatment
GSE5580Cell Specific Expression & Pathway Analyses Reveal Novel Alterations in Trauma-Related Human T-Cell & Monocyte Pathways
GSE5667Transcription data from Normal Skin and Nonlesional and Lesional Atopic Dermatitis/Eczema Skin
GSE5667Transcription data from Normal Skin and Nonlesional and Lesional Atopic Dermatitis/Eczema Skin
GSE5675Pilocytic astrocytoma
GSE5787Survey of Intra- and Inter-Tumour Heterogeneity of Gene Expression in Cervical Cancer
GSE5808Changes in PBMC Gene Expression During Acute Measles
GSE5847Tumor and stroma from breast by LCM
GSE5847Tumor and stroma from breast by LCM
GSE6008Human ovarian tumors and normal ovaries
GSE6008Human ovarian tumors and normal ovaries
GSE6008Human ovarian tumors and normal ovaries
GSE6011Expression data from quadriceps muscle of young DMD patients and age matched controls
GSE6095Diagnosis of Acute Lung Rejection by Gene Expression Profiling of Bronchoalveolar Lavage Cells
GSE6269Gene expression patterns in blood leukocytes discriminate patients with acute infections
GSE6280Expression data for normal and tumor kidneys
GSE6365Distinct transcriptional and genetic features associated with chromosome 13 deletion in multiple myeloma
GSE6401Up-regulation of translational machinery and distinct genetic subgroups characterize hyperdiploidy in multiple myeloma
GSE6477Expression data from different stages of plasma cell neoplasm
GSE6477Expression data from different stages of plasma cell neoplasm
GSE6596Comparison of gene expression data from human and mouse breast cancers: Identification of conserved breast tumor genes
GSE6613Parkinson's disease vs. controls, whole blood
GSE6740Comparison of transcriptional profiles of CD4+ and CD8+ T cells from HIV-infected pateints and uninfected control group
GSE6764Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma
GSE6914Gene expression associated with gemcitabine resistance and its reversal by bexarotene
GSE6956Tumor Immunobiological Differences in Prostate Cancer between African-American and European-American Men
GSE7055Expression of microRNAs and Protein-coding Genes Associated with Perineural Invasion in Prostate Cancer
GSE712763 Melanoma cell lines
GSE7307Human body index - transcriptional profiling
GSE7390Strong Time Dependence of the 76-Gene Prognostic Signature
GSE7390Strong Time Dependence of the 76-Gene Prognostic Signature
GSE7497Influence of TGFbeta on human resting CD4+ T cells
GSE7638Expression data from monocytes of individuals with different collateral flow index CFI
GSE7803Human pre-invasive and invasive cervical squamous cell carcinomas and normal cervical epithelia
GSE7848Effect of actein on the growth of the MDA-MB-453 breast cancer cell lines as a function of time and concentration.
GSE7894Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants
GSE7895Reversible and Permanent effects of Tobacco Smoke Exposure on Airway Epithelial Gene Expression
GSE7929Gene Signature for Aggression of Melanoma Metastases - Melanoma Metastasis (LeiATCC)
GSE7956Gene Signature for Aggression of Melanoma Metastases - Melanoma Metastasis (LeiFidler)
GSE8052Genetic variants regulating ORMDL3 expression are determinants of susceptibility to childhood asthma
GSE8157Gene expression profiling in skeletal muscle of PCOS after pioglitazone therapy
GSE8192The DExH-box RNA helicase RHAU is a Nuclear Protein Involved in Transcription and mRNA Decay
GSE8218Gene expression data from prostate cancer samples
GSE8218Gene expression data from prostate cancer samples
GSE8332Death receptor O-glycosylation controls tumor-cell sensitivity to the proapoptotic ligand Apo2L/TRAIL
GSE8397Expression profiling of the Parkinsonian Brain
GSE8440Expression data fromCongenital disorders of Glycosylation type-1 patients (CDG-I)
GSE8481Various human cell types
GSE8581Human Chronic Obstructive Pulmonary Disorder (COPD) Biomarker
GSE8650Blood Leukocyte Microarrays to Diagnose Systemic Onset Juvenile Idiopathic Arthritis and Follow IL-1 blocade
GSE8658PPARg regulated gene expression in human dendritic cells
GSE8658PPARg regulated gene expression in human dendritic cells
GSE8658PPARg regulated gene expression in human dendritic cells
GSE8835Chronic lymphocytic leukemia cells induce changes in gene expression of CD4 and CD8 T cells.
GSE8921Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response
GSE9006Gene expression in PBMCs from children with diabetes
GSE9103Skeletal Muscle Transcript Profiles in Trained or Sedentary Young and Old Subjects
GSE9166Trovafloxacin-Induced Gene Expression Changes: Comparison of Primary Human Hepatocytes to HepG2 Cells
GSE9169Gene expression during neuronal differentiation in two subtypes of SH-SY5Y
GSE9195Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
GSE9195Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
GSE9419The skeletal muscle transcript profile reflects responses to inadequate protein intake in younger and older males
GSE9476Abnormal Expression Changes in AML
GSE9676Effects of sex and age on skeletal muscle gene expression in normal men and women
GSE9844Transcriptomic Dissection of Tongue Squamous Cell Carcinoma
GSE9874Expression profiles of human macrophages
GSE9891Expression profile of 285 ovarian tumour samples
GSE9936Expression data from human breast cancer cells (MCF-7) coexpressing ERalpha and Erbeta, treated with phytoestrogens
GSE9971CYP3A5 Gene Expression is Associated with Early Recurrence of Non-small Cell Lung Cancer
GSE10063Effects of tobacco smoke on gene expression and cellular pathways in a cellular model of oral leukoplakia
GSE10172Molecular profiling of pediatric mature B-cell lymphoma treated in population-based prospective clinical trials
GSE10172Molecular profiling of pediatric mature B-cell lymphoma treated in population-based prospective clinical trials
GSE10282In-transit extremity melanoma I
GSE10325Expression data from human peripheral blood subsets
GSE10325Expression data from human peripheral blood subsets
GSE10327mRNA expression data of 62 human medulloblastoma tumors
GSE10327mRNA expression data of 62 human medulloblastoma tumors
GSE10358Discovery and validation of expression data for the Genomics of Acute Myeloid Leukemia Program at Washington University
GSE10410Triazole Antifungal Toxicogenomics: human_primary_hepatocytes_CellzDirect
GSE10445MERLION LUNG CANCER STUDY
GSE10445MERLION LUNG CANCER STUDY
GSE10474Microarray Analysis of Acute Lung Injury
GSE10592Differential gene expression from azithromycin and SMM treated human airway epithelium
GSE10792Genome wide genotyping and gene expression data of childhood B-cell precursor ALL without known genetic aberrations
GSE10843mRNA Cancer Cell Line Profiles
GSE10846Prediction of survival in diffuse large B cell lymphoma treated with chemotherapy plus Rituximab
GSE10846Prediction of survival in diffuse large B cell lymphoma treated with chemotherapy plus Rituximab
GSE10911Expression data from MCF-7aro aromatase inhibitor-resistant, tamoxifen-resistant and LTEDaro lines.
GSE10911Expression data from MCF-7aro aromatase inhibitor-resistant, tamoxifen-resistant and LTEDaro lines.
GSE11083Childhood Onset Rheumatic Disease Gene Expression Profile
GSE11166Local regulation and clinical impact of complement gene expression in deceased and living donor kidney allografts
GSE11190Interferon signaling and treatment outcome in chronic hepatitis C
GSE11318Molecular subtypes of DLBCL have distinct chromosomal aberrations
GSE11342Gene expression of Peg-interferon alfa-2b plus ribavirin in hepatitis C patients during the first 10 weeks of treatment
GSE11482Rhabdoid Tumor: Gene Expression Clues to Pathogenesis and Potential Therapeutic Targets
GSE11869The genomic response of a human uterine endometrial adenocarcinoma cell line to 17alpha-ethynyl estradiol.
GSE11869The genomic response of a human uterine endometrial adenocarcinoma cell line to 17alpha-ethynyl estradiol.
GSE11877Children's Oncology Group Study 9906 for High-Risk Pediatric ALL
GSE11877Children's Oncology Group Study 9906 for High-Risk Pediatric ALL
GSE11903Effective treatment of psoriasis with etanercept is linked to suppression of IL17 signaling, not immediate response TNF
GSE11917Vitamin D sterol effects on coronary ASMC genes
GSE12079Molecular profiling of CD3- CD4+ T-cells from patients with the lymphocytic variant of hypereosinophilic syndrome
GSE12093The 76-gene Signature Defines High-Risk Patients that Benefit from Adjuvant Tamoxifen Therapy
GSE12102Overcoming resistance to conventional drugs in Ewing's sarcoma and identification of molecular predictors of outcome.
GSE12172Common activation of RAS_MAPK pathway in serous LMP tumours
GSE12195Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12195Mutations of multiple genes deregulate the NF-kB pathway in diffuse large B cell lymphoma
GSE12237Genes that mediate breast cancer metastasis to the brain
GSE12288Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease
GSE12355Detection of Notch1-IC, Notch2-IC and EBNA2 target genes in human B cells
GSE12408Defective Cohesin in CdLS Mediates Gene Expression with Characteristics of Transcription Factor and Insulator Activity
GSE12408Defective Cohesin in CdLS Mediates Gene Expression with Characteristics of Transcription Factor and Insulator Activity
GSE12417Prognostic gene signature for normal karyotype AML
GSE12460Expression profiling of neuroblastic tumors
GSE12627Non-supervised hierarchical clustering of gene expression data
GSE12662Normal human bone marrow CD34+ cells, promyelocytes, and neutrophils and PR9 cell line PML-RARA induction time course
GSE12667Discovery of somatic mutations in lung adenocarcinomas
GSE12777Gene expression profiling of 51 human breast cancer cell lines
GSE12777Gene expression profiling of 51 human breast cancer cell lines
GSE12868ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes
GSE12939Global gene expression changes including drug metabolism and disposition induced by three-dimensional culture of HepG2
GSE12992Beta-catenin status in pediatric medulloblastomas
GSE12995Expression data for diagnosis acute lymphoblastic leukemia samples
GSE13009MCF7 EGF, HRG stimulation
GSE13009MCF7 EGF, HRG stimulation
GSE13041Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age
GSE13294Expression data from primary colorectal cancers
GSE13314Gene expression profiling of pulmonary MALT lymphoma
GSE13351Expression data from ALL samples for patients included in the Dutch Childhood Oncology Group
GSE13351Expression data from ALL samples for patients included in the Dutch Childhood Oncology Group
GSE13351Expression data from ALL samples for patients included in the Dutch Childhood Oncology Group
GSE13355Gene expression data of skin from psoriatic patients and normal controls
GSE13355Gene expression data of skin from psoriatic patients and normal controls
GSE13367Genome-wide gene expression analysis of mucosal colonic biopsies and isolated colonocytes...
GSE13425Expression data from ALL patients included in the set used to construct a classification signature (COALL cohort)
GSE13506Galanin preproprotein is associated with elevated plasma triglycerides
GSE13548Expression data from human cancer cells treated with UPR modulators under ER stress conditions
GSE13591Integrated genomics approach to detect allelic imbalances in multiple myeloma
GSE13760Gene expression profiling in arterial tissue from type 2 diabetic patients
GSE13760Gene expression profiling in arterial tissue from type 2 diabetic patients
GSE13811Analysis of gene expression response of CLL cells to co-culture with Nurse like cells
GSE13911Expression data from primary gastric tumors (MSI and MSS) and adjacent normal samples
GSE13933Trachea Epithelium as a "Canary" for Cigarette Smoking-induced Biologic Phenotype of Small Airway Epithelium
GSE13996Molecular profiling of classical Hodgkin's lymphoma tissues
GSE14018Metastases of breast cancer (U133A)
GSE14018Metastases of breast cancer (U133A)
GSE14034Alterations in Gene Expression in Human Mesothelial Cells Correlate with Mineral Pathogenicity
GSE14062MLL rearrangements in pediatric ALL and AML: MLL specific and lineage specific signatures
GSE14209Dysregulated genes associated with acquired resistance
GSE14315Effects of demethylation on lung cancer cell lines
GSE14323RMA expression data for liver samples from subjects with HCV, HCV-HCC, or normal liver
GSE14333Expression data from 290 primary colorectal cancers
GSE14383Effects of chronic exposure of human bronchial epithelial cells to low doses of cigarette smoke condensate
GSE14615Microarray analyses of induction failure in T-ALL (COG study 9404)
GSE14615Microarray analyses of induction failure in T-ALL (COG study 9404)
GSE14671EXPRESSION SIGNATURE TO PREDICT MAJOR CYTOGENETIC RESPONSE IN CHRONIC PHASE CML PATIENTS TREATED WITH IMATINIB
GSE14671EXPRESSION SIGNATURE TO PREDICT MAJOR CYTOGENETIC RESPONSE IN CHRONIC PHASE CML PATIENTS TREATED WITH IMATINIB
GSE14805Transcript expression data from glioblastoma subcutaneous xenografts and non-neoplastic control brain
GSE14828FGF-2 ENHANCES PROLIFERATION AND DELAYS LOSS OF CHONDROGENIC POTENTIAL IN HUMAN ADULT BONE MARROW-DERIVED MSCs
GSE14858Gene exprssion profile classification predicts clinical outcome in juvenile myelomonocytic leukemia
GSE14880Differentation in neuroblastomas
GSE14905Type I Interferon: Potential Therapeutic Target for Psoriasis?
GSE14924Characterisation of gene expression changes in T cells from patients presenting with AML compared with healthy T cells
GSE14926Analysis of the impact of the method of cell selection on the gene expression profile of human CD4 and CD8 T cells
GSE14934Gene expression profiles of Ras mutants.
GSE14994Patterns of gene expression and copy-number alterations in VHL disease-associated and sporadic ccRCC
GSE15258Whole blood transcript profiling of rheumatoid arthritis patients
GSE15434Gene expression profiling in AML with normal karyotype: A multicenter study investigating molecular markers in 251 cases
GSE15471Whole-Tissue Gene Expression Study of Pancreatic Ductal Adenocarcinoma
GSE15490Sequential gene expression profiling in CLL during treatment
GSE15641Gene signatures of progression and metastasis in renal cell cancer
GSE15695Comprehensive Homozygous Deletion Mapping of Myeloma Defines a Poor Prognosis Cell Death Gene Expression Signature
GSE15695Comprehensive Homozygous Deletion Mapping of Myeloma Defines a Poor Prognosis Cell Death Gene Expression Signature
GSE15695Comprehensive Homozygous Deletion Mapping of Myeloma Defines a Poor Prognosis Cell Death Gene Expression Signature
GSE15765Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma
GSE15765Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma
GSE15777Spontaneous regression of chronic lymphocytic leukemia: clinical and biological features of 9 cases
GSE15913Thalidomide Exerts Distinct Molecular Antileukemic Effects
GSE15935Expression data from 'naive' and HVC-replicon containing Huh7 cells (Clone A cells)
GSE16015AML with mutated NPM1 carrying a normal or aberrant karyotype show overlapping features
GSE16020Patients affected with autosomal dominant monocytopenia with increased susceptibility to mycobacterial infection
GSE16059Gene Expression in Peripheral Blood Leucocytes in Monozygotic Twins Discordant for Chronic Fatigue
GSE16129Enhanced Monocyte Response & Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections
GSE16131Differences Between Follicular Lymphoma With and Without Translocation t(14;18)
GSE16214Expression data from relapsing-remitting MS samples
GSE16214Expression data from relapsing-remitting MS samples
GSE16214Expression data from relapsing-remitting MS samples
GSE16237Expression data of human neuroblastoma tissue samples
GSE16391GGI: a potential predictor of relapse for endocrine-treated breast cancer patients in the BIG 1-98 trial
GSE16476Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16476Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16476Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16476Integrated bioinformatic and wet-lab approach to identify potential oncogenic networks in neuroblastoma
GSE16515Expression data from Mayo Clinic Pancreatic Tumor and Normal samples
GSE16581Genomic landscape of meningiomas: gene expression
GSE16677Gene expression profiling of Down Syndrome (DS)-AMKL and non-DS AMKL samples
GSE17025Gene Expression Analysis of Stage I Endometrial Cancers
GSE17032Expression data from human fibroblasts
GSE17183Hepatic gene expression before and during interferon and ribavirin combination therapy
GSE17195Germline genomic variations associated with childhood acute lymphoblastic leukemia
GSE17306Plasma cells from 52 patients with multiple myeloma: mRNA and miRNA expression profiling
GSE17356Expression data from prostate cancer epithelial cells from African American and European American men
GSE17459Down's syndrome with acute lymphoblastic pediatric leukemia (DS-ALL)
GSE17475Expression data from lung adenocarcinoma
GSE17536Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples)
GSE17536Metastasis Gene Expression Profile Predicts Recurrence and Death in Colon Cancer Patients (Moffitt Samples)
GSE17700Factorial study for evaluating the effect of Affy platform and lab on gene expression measurements
GSE17703Bone marrow gene expression of pediatric acute lymphoblastic leukemia (ALL)
GSE17800Myocardial gene expression profiles and cardiodepressant autoantibodies predict response of patients with dilated cardiomyopathy to immunoadsorption therapy
GSE17855Expression data from pediatric AML patients
GSE17855Expression data from pediatric AML patients
GSE17920Expression data of diagnostic biopsy samples from Hodgkin lymphoma patients
GSE17951Gene expression analysis of prostate cancer samples using Affymetrix U133Plus2 array
GSE17951Gene expression analysis of prostate cancer samples using Affymetrix U133Plus2 array
GSE17967RMA expression data for liver samples from subjects with HCV cirrhosis with and without concomitant HCC
GSE18005Human colorectal cancer cell lines treated with several inhibitors of PI3Kinase - AKT signaling pathway
GSE18018Multilineage dysplasia and AML with mutated nucleophosmin
GSE18088Correlation of molecular profiles and clinical outcome of stage UICC II colon cancer patients
GSE18206Analysis of human in vivo irritated epidermis: differential profiles induced by sodium lauryl sulphate and nonanoic acid
GSE18323Expression data from a malaria vaccine trial (HG-U133A2.0 and U133 Plus 2.0)
GSE18497Diagnosis-relapse in ALL
GSE18670Pancreatic cancer circulating tumor cells express a cell motility gene signature that predicts survival after surgery
GSE18674Gene expression profile of Human tissues and cells
GSE18723Gene Expression Circulating B Lymphocytes for Smoking Females
GSE18791Antiviral response dictated by choreographed cascade of transcription factors
GSE18842Gene expression analysis of human lung cancer and control samples
GSE18995Expression data from donor lungs of cardiac death and brain death donors
GSE19143Gene expression data from children diagnosed with ALL in vitro sensitive or resistant to prednisolone
GSE19147CD3+ T-cells of B-cell chronic lymphocytic leukemia
GSE19188Expression data for early stage NSCLC
GSE19234Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival.
GSE19246A novel method of amplification of FFPET derived-RNA enables accurate disease classification with microarrays
GSE19301Gene Expression Patterns in Peripheral Blood Mononuclear Cells Associated with Asthma Exacerbation Attack
GSE19314Sarcoidosis-specific markers from whole blood gene expression
GSE19314Sarcoidosis-specific markers from whole blood gene expression
GSE19475Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19475Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19475Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19475Gene expression data from infants (<1 year of age) diagnosed with Acute Lymphoblastic Leukemia (ALL)
GSE19577MLL partner genes confer distinct biological and clinical signatures of pediatric AML, an AIEOP study
GSE19804Genome-wide screening of transcriptional modulation in non-smoking female lung cancer in Taiwan
GSE20181Letrozole (Femara) early and late responses to treatment
GSE20181Letrozole (Femara) early and late responses to treatment
GSE20196Gene expression profile of poorly differentiated synovial sarcoma
GSE20559Gene expression signature reflects differentiation differences rather than telomere maintenance mechanism
GSE20711Epigenetic portraits of human breast cancers (expression data)
GSE20910Expression data from Down syndrome and non-Down syndrome pediatric acute lymphoblastic leukemia cases
GSE21029The lymph node microenvironment promotes B-cell receptor signaling, NF-κB activation, and tumor proliferation in chronic lymphocytic leukemia (CLL)
GSE21122Whole-transcript expression data for soft-tissue sarcoma tumors and control normal fat specimens
GSE21452Integrated genomic profiling in mantle cell lymphoma
GSE21477Gene Expression Changes in Primary Human Nasal Epithelial Cells exposed to Formaldehyde in vitro
GSE21589The Relationship between Virus Replication and Host Gene Expression in Lymphatic Tissue during HIV-1 Infection
GSE21610Gene expression analysis in non-failing and failing myocardium pre and post pulsatile and non-pulsatile VAD support
GSE22056High VEGFC expression is associated with unique gene expression profiles and predicts adverse prognosis in pediatric and adult acute myeloid leukemia.
GSE22083Expression data from human skin exposed to solar-simulated radiation with or without sunscreen
GSE22224Comparative Transcriptional and Phenotypic Peripheral Blood Analysis of Kidney Recipients under Cyclosporin A or Sirolimus Monotherapy
GSE22356Altered immune phenotype in peripheral blood cells of patients with scleroderma-associated pulmonary hypertension
GSE22470Translocations Activating IRF4 Identify a Subtype of Germinal-Center-Derived B-cell Lymphoma Affecting Predominantly Children and Young Adults
GSE22470Translocations Activating IRF4 Identify a Subtype of Germinal-Center-Derived B-cell Lymphoma Affecting Predominantly Children and Young Adults
GSE22470Translocations Activating IRF4 Identify a Subtype of Germinal-Center-Derived B-cell Lymphoma Affecting Predominantly Children and Young Adults
GSE22541Expression data from pulmonary metastases and primary tumors of clear-cell renal cell carcinoma (ccRCC) with different disease-free survivals
GSE22573Organotpyic Human Epithelial Neoplasia
GSE22707Absence of significant overlap in transcriptional patterns between operationallytolerant liver and kidney recipients
GSE22762An eight-gene expression signature for the prediction of survival and time to treatment in chronic lymphocytic leukemia
GSE22762An eight-gene expression signature for the prediction of survival and time to treatment in chronic lymphocytic leukemia
GSE22762An eight-gene expression signature for the prediction of survival and time to treatment in chronic lymphocytic leukemia
GSE22886Expression profiles from a variety of resting and activated human immune cells
GSE23038Normal prostate cells were immortalized and cultured for 650 days till several transformation hallmarks were observed
GSE23038Normal prostate cells were immortalized and cultured for 650 days till several transformation hallmarks were observed
GSE23120Basal gene expression data from Human Variation Panel
GSE23120Basal gene expression data from Human Variation Panel
GSE23120Basal gene expression data from Human Variation Panel
GSE23120Basal gene expression data from Human Variation Panel
GSE23120Basal gene expression data from Human Variation Panel
GSE23120Basal gene expression data from Human Variation Panel
GSE23120Basal gene expression data from Human Variation Panel
GSE23293Definition and characterization of the systemic T cell dysregulation in untreated indolent B cell lymphoma and very early CLL
GSE23553Gene expression changes with induction of in-vitro platinum-resistance in ovarian cancer cell lines.
GSE23806Expression data of glioblastoma stem-like (GS) cell lines, conventional glioma cell lines and primary tumors
GSE23806Expression data of glioblastoma stem-like (GS) cell lines, conventional glioma cell lines and primary tumors
GSE23806Expression data of glioblastoma stem-like (GS) cell lines, conventional glioma cell lines and primary tumors
GSE23988Expression data from breast cancer FNA biopsies from patients (US samples)
GSE24187Atorvastatin, rosuvastatin and rifampicin effect on human primary hepatocyte transcriptome [Affymetrix platform]
GSE24427Expression data of multiple sclerosis patients receiving subcutaneous Interferon-beta-1b therapy [U133 A and B]
GSE24427Expression data of multiple sclerosis patients receiving subcutaneous Interferon-beta-1b therapy [U133 A and B]
GSE24514Expression data from human MSI colorectal cancer and normal colonic mucosa
GSE24742Effects of Rituximab on global gene expression profiles in the RA synovium
GSE24870Gene expression profiling of CD34+ subsets in Multiple Myeloma and healthy individuals
GSE25429Gene expression profiles of primary cultured ovarian cells and ovarian cancer cell lines in the presence and absence of a DNA methyltransferase inhibitor
GSE25550t(11;18)-positive vs. t(11;18)-negative MALT lymphoma
GSE25550t(11;18)-positive vs. t(11;18)-negative MALT lymphoma
GSE25571Expression analysis of genes located in the minimally deleted regions of 13q14 and 11q22-23 in chronic lymphocytic leukemia - unexpected expression pattern of the RHO GTPase activator ARHGAP20
GSE25613A Novel Pro-Survival Function of Cyclin-D1 Underlies Its Oncogenic Role and Potential as a Therapeutic Target in Human and Murine Mantle Cell Lymphoma
GSE25941Effects of age on the skeletal muscle transcriptome
GSE26281Integrated Genetic and Epigenetic Analysis of Childhood Acute Lymphoblastic Leukemia Reveals a Synergistic Role for Structural and Epigenetic Lesions In Determining Disease Phenotype
GSE26344In vitro models of glioblastoma (GBM)
GSE26366Notch/HES1-mediated PARP1 activation: A cell-type specific mechanism for tumor suppression
GSE26511Involvement of the TGF-β and β-catenin pathways in pelvic lymph node metastasis in early stage cervical cancer
GSE26549Gene Expression Profiling Predicts the Development of Oral Cancer
GSE26622MOLECULAR CHARACTERIZATION OF LIVER ALLOGRAFTS FROM OPERATIONALLY TOLERANT TRANSPLANT RECIPIENTS (Affymetrix)
GSE26682MRE11 Deficiency Increases Sensitivity to Poly(ADP-ribose) Polymerase Inhibition in Microsatellite Unstable Colorectal Cancers.
GSE26682MRE11 Deficiency Increases Sensitivity to Poly(ADP-ribose) Polymerase Inhibition in Microsatellite Unstable Colorectal Cancers.
GSE26682MRE11 Deficiency Increases Sensitivity to Poly(ADP-ribose) Polymerase Inhibition in Microsatellite Unstable Colorectal Cancers.
GSE26713Integrated transcript and genome analyses reveal NKX2-1 and MEF2C as potential oncogenes in T-ALL
GSE26869Regulation of myogenic progenitor proliferation in human fetal skeletal muscle by BMP4 and its antagonist Gremlin.
GSE26886Gene expression profiling of Barrett's esophagus, adenocarcinoma, esophageal squamous epithelium and squamous cell carcinoma
GSE26971Affymetrix data for training of Endopredict algorithm
GSE27041OXPHOS complex I deficiency leads to transcriptional changes of the Nrf2-Keap1 pathway and selenoproteins.
GSE27155Human thyroid adenomas, carcinomas, and normals
GSE27155Human thyroid adenomas, carcinomas, and normals
GSE27263Assessment of genotoxic effects and changes in gene expression in humans exposed to formaldehyde by inhalation under controlled conditions
GSE27389Substitutions in the KRas oncogene determine protein behavior: Implications for signaling and clinical outcome.
GSE27651The Anterior Gradient Homolog 3 (AGR3) Gene Is Associated with Differentiation and Survival in Ovarian Cancer
GSE28044Expression data from non-malignant fallopian tube epithelium
GSE28392Effects of resistance exercise on the transcriptome in MHC I and MHC IIa muscle fibers of young and old women
GSE28497New markers for minimal residual disease detection in acute lymphoblastic leukemia
GSE28571Gene Copy Number Aberrations are Associated with Survival in Histological Subgroups of Non-Small Cell Lung Cancer (expression data)
GSE28691Characterization of an Oxaliplatin Sensitivity Predictor in a preclinical Murine Model of Colorectal Cancer
GSE28702CRC samples for FOLFOX therapy prediction
GSE28796Gene expression profiles of pretreatment biopsies from dose-dense-docetaxel-treated breast cancers
GSE28821Laser-capture microdissected invasive micropapillary carcinomas of the breast
GSE28995THP-1 cell study: RA and TNF Treatments; RA time course
GSE29001Identification of Unique Therapeutic Targets in Esophageal Squamous Cell Carcinoma
GSE29023Predict cytogenetic abnormalities with gene expression profiles
GSE29175Expression data from ovarian cancer cell lines
GSE29354Mesothelioma tumor gene expression profiles
GSE29570The mtDNA Amerindian Haplogroup B2 enhances the risk for Cervical Cancer of HPV: de-regulation of mitochondrial genes may be involved.
GSE29683Coexpression of Normally Incompatible Developmental Pathways in Retinoblastoma Genesis [human tumor/cell line data]
GSE29718An early inflammatory gene profile in visceral adipose tissue in children
GSE29721The landscape of promoter DNA hypomethylation in liver cancer (expression data)
GSE29908Expression data from peripheral blood mononuclear cell in patients with type 1 diabetes before and after peripheral stem cell transplantation
GSE29986gene expression analyses of pediatriclymphoblastic lymphomas and leukemias
GSE30074Expression data from 30 medulloblastomas
GSE30161Genomic Multivariate Predictors of Response to Adjuvant Chemotherapy in Ovarian Carcinoma: Predicting Platinum Resistance
GSE30240Expression data from 5 human cell lines exposed to IR (5 Gy)
GSE30442Whole-exome sequencing identifies mutations of BCOR in acute myeloid leukemia with normal karyotype
GSE30723Gene Expression Profiles of human primary alveolar type II (ATII) cells and macrophages (AMs) after influenza virus infection
GSE30784Gene expression profiling of oral squamous cell carcinoma (OSCC)
GSE30903Expression data from untreated and ATP treated AML blasts
GSE30929Whole-transcript expression data for liposarcoma
GSE30979Gene expression in hypoxic non-small cell lung cancer
GSE31312Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31312Development and application of a new immunophenotypic algorithm for molecular subtype classification of Diffuse Large B-Cell Lymphoma (DLBCL): Report from an International DLBCL Rituximab-CHOP Consortium Program Study
GSE31348Tuberculosis Patients Blood Gene Expression Through Treatment
GSE31403Clinically Relevant Subsets Identified by Gene Expression Patterns Support a Revised Ontogenic Model of Wilms Tumor: A Children's Oncology Group Study
GSE31504Impact of Gene Expression Profiling Based Risk Stratification in Patients with Myeloma Receiving Initial Therapy with Lenalidomide and Dexamethasone
GSE31534Gene expression profile in A375 melanoma cells after 45 functionally important molecules were knocked down using siRNA
GSE31620MicroRNA-1 is a candidate tumor suppressor and prognostic marker
GSE31684Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer
GSE31684Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer
GSE31773Comparison of mRNA expression in circulating T-cells from patients with severe asthma
GSE31912Gene expression profile in MCF7 breast cancer cells after 78 functionallly important molecules were knocked down using siRNA.
GSE32448CPDR tumor-benign 80 genechip dataset
GSE32474Comparison between cell lines from 9 different cancer tissue (NCI-60) (Affymetrix U133 Plus 2.0)
GSE32474Comparison between cell lines from 9 different cancer tissue (NCI-60) (Affymetrix U133 Plus 2.0)
GSE32607Human lymphocyte activation during the G0 to G1 transition
GSE32646GSTP1 expression predicts poor pathological complete response to neoadjuvant chemotherapy in ER-negative breast cancer
GSE32901Expression data for effector T cells
GSE32962In vitro prednisolone resistance signature in MLL-rearranged infant ALL
GSE33109Gene expression changes in human neural cells exposed to VX (O-ethyl S-[2-(diisopropylamino)ethyl] methylphosphonothiolate)
GSE33113AMC colon cancer AJCCII
GSE33113AMC colon cancer AJCCII
GSE33458Gene expression analysis of osteosarcoma tumor-initiating cells (High) vs bulk tumor cells (Low)
GSE34171Integrative Analysis of a series of newly diagnosed Diffuse Large B-cell Lymphomas (DLBCLs)
GSE34171Integrative Analysis of a series of newly diagnosed Diffuse Large B-cell Lymphomas (DLBCLs)
GSE34205Transcriptional profile of PBMCs in patients with acute RSV or Influenza infection
GSE34211Pfizer Molecular Profile Data for Cell Lines
GSE34211Pfizer Molecular Profile Data for Cell Lines
GSE34607Airborne particulate matter affects gene expression in BEAS-2B bronchial epithelial cells.
GSE34620Expression profiling of Ewing sarcoma samples
GSE34670Gene expression in pediatric cALL
GSE34733Methylation of the Proximal, Distal and Core Promoter of CEBPA in 572 Cases with Normal Karyotpye AML and 44 with t(8;21) Disclosed Different Frequencies but no Impact on Prognosis
GSE34860Gene expression profiling in acute myeloid leukemia with mutated NPM
GSE35287Unique Transcriptome, Pathways, and Networks in the Human Endometrial Fibroblast Response to Progesterone in Endometriosis
GSE35493Pediatric rhabdoid tumors of kidney and brain show many differences in gene expression but share dysregulation of cell cycle and epigenetic effector genes
GSE35896Gene expression data from 62 colorectal cancers
GSE36245Gene expression data from glioblastoma tumor samples
GSE36701Gene expression analysis of rectal mucosa in chronic irritable bowel syndrome (IBS) compared to healthy volunteers (HV)
GSE36771Expression data from primary breast tumors (Auckland)
GSE36772Expression data from primary breast tumors (NUH)
GSE36773Expression data from primary breast tumors (IJB+OXF)
GSE36824Clonal competition with alternating dominance in multiple myeloma [GEP]
GSE36824Clonal competition with alternating dominance in multiple myeloma [GEP]
GSE36895Molecular Genetic Classification of clear-cell Renal Cell Carcinoma (ccRCC) based on the Gene Expression Profiling of Tumors and Tumorgrafts deficient for BAP1 or PBRM1
GSE37088Follicular Lymphoma expression array
GSE37200Gene expression profiling of Barrett's esophageal tissues and esophageal adenocarcinoma specimens
GSE37201Gene expression profiling of esophageal adenocarcinoma
GSE37307Aberrant expressed genes in AML
GSE37364Expression data from human colonic biopsy samples(adenoma-carcinoma)
GSE37371Expression data from Ewing's sarcoma tumor samples
GSE37418Novel mutations target distinct subgroups of medulloblastoma.
GSE37567Methodoligies for identifying lead toxicity
GSE38351The multifaceted balance of TNF-a and type I / II interferon responses in SLE and RA: how monocytes manage the impact of cytokines
GSE38351The multifaceted balance of TNF-a and type I / II interferon responses in SLE and RA: how monocytes manage the impact of cytokines
GSE38627Thalidomide in Total Therapy 2 Overcomes Inferior Prognosis of Myeloma with Low Expression of the Glucocorticoid Receptor Gene NR3C1
GSE38885Expression data from post-transplant lymphoproliferative disorder (PTLD) patient samples
GSE39088Down-regulation of Interferon signature in systemic lupus erythematosus patients by active immunization with Interferon alpha-Kinoid
GSE39204Gene-expression profiles of ascites-cytology-positive ovarian cancer
GSE39411Expression data from healthy and malignant (chronic lymphocytic leukemia, CLL) human B-lymphocytes after B-cell receptor stimulation
GSE39454Genomic signatures characterize leukocyte infiltration in myositis muscles
GSE39612Distinct gene expression profiles of viral- and non-viral associated Merkel cell carcinoma revealed by transcriptome analysis
GSE39671Expression data from untreated CLL patients
GSE39976Determination of molecular markers for BRCA1 and BRCA2 heterozygosity using gene expression profiling
GSE40182Culturing Cytotrophoblasts Reverses Gene Dysregulation in Preeclampsia Revealing Possible Causes
GSE40231The Stockholm Atherosclerosis Gene Expression (STAGE) study: Global Gene Expression data from coronary and carotid artery disease patients
GSE40263Novel antioxidative peptides with potential to reduce psoriatic changes in PBMCs
GSE41445Basal gene expression data of 21 cell lines (18 cancer and 3 non-tumorigenic)
GSE42203Global expression analysis of DLBCL and SMZL cell lines
GSE42743Oral Cavity Cancer Compared to Adjacent Normal Tissue [Validation Set]
GSE42816Gene expression propionic patients, carriers, and controls
GSE42822Expression data from breast cancer FNA biopsies from patients ( (USO samples)
GSE43290Expression data from meningiomas and normal meninges
GSE43553Microarray-based gene expression profiling in patients with cryopyrin-associated periodic syndromes defines a disease-related signature and IL-1-responsive transcripts.
Mouse
GEO Acc.Title
GSE1471Cardiac muscle, comparisons of wild type and mdx mice, 8 week and 10.5 month (Porter lab)
GSE1479C57BL/6 Benchmark Set for Early Cardiac Development
GSE3100Cystic Fibrosis Mouse Lung Profiles
GSE3184Murine Airway Hyperresponsiveness
GSE3203Influenza virus infection-induced gene expression changes of regional B cells are mediated in part through type I IFN
GSE3414Immune Response to Nippostrongylus brasiliensis in the mouse lung
GSE5037zhang-affy-mouse-217286
GSE5130Accurate and precise transcriptional profiles from 50 pg of total RNA or 100 flow-sorted primary lymphocytes
GSE5394Gene Expression after Cochlear Removal in Cochlear Nucleus at P7 and P21
GSE5657Effect of X-linked hypophosphatemia (the Hyp mutation) on gene expression in the mid-shaft of the mouse femur
GSE6453Expression microarray analysis of pubertal mouse mammary gland development
GSE6509Gene Profile of RU486 effect on LPS induced gene expression in CNS.
GSE7487Gene profiling of pathological cardiac hypertrophy vs physiological hypertrophy
GSE7536Microarray expression profiling of discrete microdissected mouse inner ear tissues from E9 to E15 at half-day intervals.
GSE7798Osteoclastic estrogen receptor alpha mediates the osteoprotective estrogen action through Fas ligand signaling
GSE8396Effect of Synthetic Dietary Triglycerides: a Novel Research Paradigm for Nutrigenomics
GSE8512Expression data from mouse bone marrow macrophages from a strain intercross
GSE8836CLL in Em-TCL1 mice provides a biologically relevant model to unravel and reverse immune deficiency in human cancer.
GSE8949Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
GSE9355Microarray expression profiles of mammary tumors developed in Wap-Cre;Etv6-NTRK3 mice
GSE9371Estrogen receptors alpha and beta mediation of gene expression in mouse vascular tissue
GSE9533PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression
GSE9563Translation state array analysis of Mouse embryonic stem cells and embryoid bodies
GSE9785Expression data from Newborn mice infected with Shigella flexneri
GSE9954Large-scale analysis of the mouse transcriptome
GSE9975newly transcribed RNA (nt-RNA) for IFN alpha and gamma time course
GSE10246GNF Mouse GeneAtlas V3
GSE10493Novartis 12 Strain Diet Sex Survey
GSE10627Mll-AF9 induced changes in gene expression in various hematopoietic cells
GSE10744Copy number variation and gene expression in the mouse
GSE11056Expression data from mouse lung
GSE11494Innate immune response of murine nasal-associated lymphoid tissue (NALT) to Streptococcus pyogenes infection.
GSE11662GADD45a in ventilator-induced lung injury: role of Akt signaling
GSE11796ligand-activated and -unactivated AHR in wiltype and mutant hepatoma cells
GSE12413Prediction of left ventricle systolic dysfunction in mice using gene expression profiling
GSE12420Gene profiling of heart atria in PI3K and Mst1 mouse models
GSE12730Mouse gestational protein restriction: Newborn offspring liver and hindleg muscle
GSE12905Foxl2 functions in sex determination and histogenesis throughout mouse ovary development, analyzed by Affymetrix arrays
GSE13302Gene expression profiling in the lung and liver of Perfluorooctane sulfonate (PFOS) exposed mouse fetuses
GSE13379Application of a translational profiling approach for the comparative analysis of CNS cell types.
GSE13443Induction of systemic disease-specific salivary biomarker profiles in mouse cancer models
GSE13522Transcriptional response in skin of mouse 24 hours after intradermal infection with Trypanosoma cruzi
GSE13873Expression data from murine gastric epithelium
GSE14350IL-2 dependent genes of T regulatory and T effector cells
GSE14499Effect of BDNF on the APP transgenic mouse model of Alzheimer's disease
GSE14539Chronic liver inflammation-induced double strand DNA breaks enhance hepatocarcinogenesis
GSE14810Microarray data from murine C3H/10T1/2 and 3T3 L1 adipocytes
GSE14917C/EBPa is required for pulmonary cytoprotection from hyperoxia injury
GSE14929Myocardial expression data from gnotobiotic wild-type and Ppara-/- mice
GSE15129Coenzyme Q10-dependent gene expression in SAMP1 mice tissues
GSE15401Expression data from mouse aorta during and following transient hyperglycaemia
GSE15729Gene Expression of ApoE Null and ApoE Null/RAGE Diabetic and Non-diabetic Mice
GSE15907Immunological Genome Project data Phase 1
GSE16012Gene expression profiles in Elastin (Eln+/-) mouse aorta and aortic valve tissue
GSE16361Gene expression profiling of muscles from transgenic humanSODG93A mice at symptomatic stage
GSE16496Expression profile of adult mouse 51 CNS regions
GSE16585Expression profiling of P14 and P28 mouse retina from 4 genotypes: +/+, Rorb-/- , +/+;CrxpNrl and Rorb-/-;CrxpNrl
GSE16902Expression data from mouse gastric tumor models
GSE16994Microarray analysis of iris gene expression in mice with mutations influencing pigmentation
GSE17110Gene expression data from P. gingivalis infected Mouse
GSE17438Transcriptional profiling of 77 tissue samples from germ-free and conventionally raised mice.
GSE17478Particulate Matter effect on Mouse Model of Cardiac Failure: Lung and Heart Left Ventricle
GSE17509Reduced levels of protein tyrosine phosphatase CD45 protect mice from the lethal effects of Ebola virus infection
GSE17825Murine fracture healing
GSE17864mRNA profiling reveals divergent roles of PPARa and PPARß/d in regulating mouse liver gene expression (PPARb/d samples)
GSE18216Non-targeted effects of low dose ionizing radiation act via TGFβ to promote mammary carcinogenesis
GSE18460Lactobacillus acidophilus induces virus immune defense genes in murine dendritic cells by a TLR-2 dependent mechanism
GSE18614Differential Regulation of Mitogen-Activated Protein Kinases by Acetaminophen in TAMH cells
GSE18740Luteolin has anti-inflammatory and neurotrophic effects on microglia
GSE18858Transcriptional Biomarkers to Predict Female Mouse Liver Tumors in Rodent Cancer Bioassays - A 26 Chemical Set
GSE18859Gene expression in the colon of DSS-treated Pglyrp1-/-, Pglyrp2-/-, Pglyrp3-/-, and Pglyrp4-/- mice
GSE18896ERRγ Regulates Cardiac, Gastric and Renal Potassium Homeostasis
GSE19137Interferon response genes as immunopathogenic correlates of SARS coronavirus infection in mice (129/S6/SvEv)
GSE19322Expression data from C57BL/6J and MRL/MpJ hearts following acute myocardial infarction
GSE19401Expression data from murine follicular dendritic cells
GSE19499Expression data from mouseT-cell lymphomas
GSE19675Negative regulation of the IFN/STAT signaling pathway by the Trim24 tumor suppressor protein through Rara inhibition
GSE19793MyD88-mediated signaling prevents development of adenocarcinomas of the colon via interleukin-18
GSE19855Molecular Characterization of Treponema denticola infection-induced bone and soft tissue transcriptional profiles
GSE20389Molecular Characterization of Tannerella forsythia infection-induced bone and soft tissue transcriptional profiles
GSE20465Her2/Neu breast cancer mouse model whole tissue transcriptome
GSE20547A53T-α-synuclein overexpression mouse model signaling and striatal synaptic plasticity
GSE20614Gene expression profiling of mouse tumors arising from Keratin 6-positive mammary cells
GSE20621Immunoregulatory actions of epithelial cell PPAR g at the colonic mucosa
GSE20684The gene encoding the hematopoietic stem cell regulator CCN3 (NOV) is under direct cytokine control through the transcription factors STAT5a/b.
GSE21263Network Analysis of Skin Tumor Progression Identifies a Rewired Genetic Architecture Affecting Inflammation and Tumor Susceptibility (papillomas)
GSE21419Laser Capture Microdissection of Hyperlipidemic Mouse Aorta Atherosclerosis
GSE21716Hepatic xenobiotic metabolizing enzyme gene expression through the life stages of the mouse
GSE22006Medulloblastoma tumors derived from Ptch+/-p53-/- transgenic mouse allografted in nude mice
GSE22215Early and Late gene expression responses to Salmonella infection in the mouse intestine
GSE22307Expression data from mouse colon tissue response to DSS induction at day 0, 2, 4 and 6
GSE22506Unacylated Ghrelin Rapidly Modulates Lipogenic and Insulin Signaling Pathway Gene Expression in Metabolically Active Tissues of GHSR Deleted Mice
GSE22871Expression data from wild-type and PPARalpha-null mice exposed to perfluorooctane sulfonate (PFOS)
GSE22873Ager (Rage) and Myd88 deletion in resected mouse livers
GSE23006Transcriptional profiling of awound healing process in skin and oral mucosa
GSE23009Effect of intra-cytoplasmic sperm injection (ICSI) on gene expression and development of mouse preimplantation embryos
GSE23182Systemic inflammation modulates Fc receptor expression on microglia in chronic neurodegeneration
GSE23408Global gene expression profiles and the progression of pro- and anti-inflammatory pathways in mouse models
GSE23780A Novel Statistical Algorithm for Gene Expression Analysis Differentiates PXR-Dependent and Independent Mechanisms of Toxicity
GSE23938Comprehensive genomic profiling identified miRNA signatures associated with mammary tumor differentiation and development
GSE24207mRNA analysis in different mouse tissues
GSE24594MMTV-Myc tumor development in E2F-null backgrounds
GSE24637Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using TALLYHO x C57BL6 F2 mice
GSE24773Expression data from WT, Crebbp+/- and Ep300+/- bone marrow stroma
GSE24873IL-17-induced NF-kB activation via CIKS/Act1: Physiologic significance and signaling mechanisms
GSE24920Gene Expression in Myotonic Dystrophy
GSE25029Ionizing radiation in GI tract of Tweak KO mice
GSE25098Rhabdomyosarcoma can be initiated in activated Pax7+ Muscle Progenitor Cells
GSE25123PPARg and IL-4-induced gene expression data from PPARg +/- LysCre and PPARg fl/- LysCre mouse bone marrow-derived macrophages
GSE25306Gene expression profiling of skeletal muscles treated with a soluble activin type IIB receptor
GSE25313Effect of PDE4 inhibition on host gene expression of Mtb-infected mouse lungs.
GSE25488Expression data from C3(1)Tag mammary tumors, tumor derived cell line (M6) and normal mammary tissue (FVB)
GSE25908Distinct Protein Degradation Induced by Different Disuse Models of Skeletal Muscle Atrophy
GSE26147Examination of inflammatory transcripts during a transfer model of type I diabetes.
GSE26299Gene expression profiling in DBA/2J glaucoma
GSE26464High Fat Diet Reduces the Expression of Glutathione Peroxidase 3 in Mouse Prostate
GSE26475Microarray expression data from whole murine knee joints at early time points post surgery in the destabilization of medial meniscus (DMM) model of OA
GSE26671Expression data of murine model of cardiac hypertrophy
GSE26830Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells (mRNA)
GSE27149Expression data from murine vaginal samples following adjuvant treatment
GSE27546Effects of HMGN variants on cellular transcription profile
GSE27715Gene expression profiles of germ cells, supporting cells, interstitial cells (including steroidogenic precursors), and endothelial cells in the developing testis and ovary at 11.5, 12.5, and 13.5 dpc. (GUDMAP Series ID: 43)
GSE28559An expression microarray approach for the identification of candidate metastable epialleles in the mouse genome
GSE29164IL-12 induces myeloid cells in situ to cross-present antigen
GSE29285C/EBPa Regulates Protease/anti-protease Balance and Mediates Bronchiolar Cell Recovery After Injury
GSE29632Effect of Nrf2 deletion in postnatal lung development and BPD phenotype in newborn mice
GSE29670Polymicrobial periodontal pathogens transcriptomes in calvarial bone and soft tissue
GSE29685Coexpression of Normally Incompatible Developmental Pathways in Retinoblastoma Genesis [mouse model data]
GSE29897Long non-coding RNAs regulate adipogenesis (Affymetrix)
GSE30457Dissecting primary (translation independent) from secondary (translation dependent) IFN-mediated differential gene expression
GSE30971The Histone Methyltransferase Wbp7 Controls Macrophage Function through GPI Glycolipid Anchor Synthesis. [Expression Profile]
GSE31115Transcriptional profiling of 53 tissue samples from germ-free and conventionally raised mice
GSE31372Misprocessing of APP and accumulation of β-Amyloid causes early alteration of pathways implicated in late-onset Alzheimer disease.
GSE31409Lentiviral vector-based insertional mutagenesis identifies new clinically relevant cancer genes involved in the pathogenesis of hepatocellular carcinoma
GSE31561Transcriptional analysis of organ-specific toxicity induced by a panPPAR agonist in mice: Identification of organ-specific toxicity biomarkers
GSE31995Gene Expression data from Mouse Balb/c Bone marrow derived macrophages infected by the promastigote form of Leishmania major parasite (P) or Killed parasite (Kp) during a time course of infection [Balb/c]
GSE31996Gene Expression data from Mouse C57bl6 Bone marrow derived macrophages infected by the promastigote form of Leishmania major parasite (P) or Killed parasite (Kp) during a time course of infection [C57bl6]
GSE32316FGFR1 target genes in brown adipose tissues
GSE32423Expression data from naive and memory CD8 T cells cultured in presence or absence of IL-4
GSE32500Whole Genome Expression after Hypoxia andReoxygenation in the Newborn Mouse Lung, Brain and Eye
GSE32706Comparative transcriptomics and metabolomic analysis of fenofibrate and fish oil treatments in mice
GSE32994Oct4 and jhdm1b infected MEF with or without vitamin C treatment
GSE33085Transcriptome analysis of adult retina cell types.
GSE33199A mouse model of the most aggressive subgroup of human medulloblastoma [Mouse430_2]
GSE33549Expression data from mouse T-cell lymphomas
GSE33726The circadian clock coordinates ribosome biogenesis.
GSE33744Cross-species transcriptional networks in Diabetic Glomerulopathy in mouse and man
GSE33931Expression data from mouse muscle
GSE34071Expression data of Normal versus Mutant MPS VII C3H mouse
GSE34078Global gene expression profiling in mouse plasma cell tumor precursor and bystander cells revels potential intervention targets for plasma-cell neoplasia
GSE34723Gene Expression Commons: an open platform for absolute gene expression profiling
GSE34773Skeletal muscle PGC-1a mediates mitochondrial, but not metabolic, changes during calorie restriction.
GSE35077A gene expression database for retinal neuron subtypes
GSE35243Expression data from embryonic mouse pleuroperitoneal folds and diaphragms
GSE36074Differential regulation of extracellular matrix constituents in myocardial remodeling with and without heart failure following pressure overload
GSE36806Chronic TNBS Colitis in the FN14 KO Mouse
GSE36826Neutrophil-derived IL-1β is sufficient for abscess formation in immunity against Staphylococcus aureus in mice
GSE36838Expression profiling of the effect of high-fat diet, low-fat diet, CR and exercise on mice liver
GSE36888Critical Role of STAT5 Transcription Factor Tetramerization for Cytokine Responses and Normal Immune Function (RNA)
GSE37000The transcriptional landscape of hematopoietic stem cell ontogeny
GSE38048E2F1 loss induces spontaneous tumour development in Rb-deficient epidermis
GSE38093Diet-Induced Obesity Exacerbates Inflammatory and Oxidative Stress Responses in Mice Exposed to Cigarette Smoke
GSE38574Gene expression data from Ldlr-/-, Apob100/100, Mttp flox/flox Mx1-Cre mice at different stages of atherosclerosis development
GSE38754Temporal changes of gene expression in mouse heart, kidney and lung during juvenile growth
GSE38826Cooperative and antagonistic roles for Irx3 and Irx5 in cardiac morphogenesis and postnatal physiology
GSE38952Expression data from AJ and C3H mouse lungs exposed to NNK
GSE39304Double-stranded RNA induces molecular and inflammatory signatures that are directly relevant to COPD
GSE39562Immortalized clonal brown, beige and white adipose cell lines
GSE40151Bleomycin induces molecular changes directly relevant to idiopathic pulmonary fibrosis:A model for “active” disease.
GSE40439Gene expression analysis of Ncor1 muscle-specific knockout and PGC-1alpha muscle-specific transgenic skeletal muscle
GSE40609Murine PDAC cell lines
GSE40610Expression data from a Charcot-Marie-Tooth 1B neuropathy mouse model
GSE40758Transgenic Eµ-myc mouse lymphoma expression data for test dataset [Mouse430A_2]
GSE40857Expression data from mouse optic nerve head after optic nerve crush
GSE41438Gestational Age-Dependent Changes in Gene Expression of Metabolic Enzymes and Transporters in Pregnant Mice
GSE41768PTP1B deficiency effect on mammary gland development and differentiation
GSE42264Hsp70 and a Novel Axis of Type 1 Interferon-Dependent Antiviral Immunity in the Measles Virus-Infected Brain
GSE42533Her2/Neu tumorigenesis and metastasis is regulated by E2F transcription factors
GSE42742Murine microenvironment metaprofiles associate with human cancer etiology and intrinsic subtypes
GSE42858Progesterone receptor-dependent gene signatures in the mouse mammary gland after acute progesterone treatment
GSE42892Microarray Analysis of a Familial Hypertrophic Cardiomyopathy Mouse Model Rescued by a Phospholamban Knockout
GSE43155Expression profiling of wildtype mouse cornea in development, adult, and aging
GSE43373Molecular and cellular response profiles induced by the TLR4 agonist-based adjuvant Glucopyranosyl Lipid A
GSE43775Induction of the mouse germ cell fate by transcription factors in vitro [exp1]
GSE43961Xist RNA is a potent suppressor of hematologic cancer in mice.
GSE43969Reconstruction of the dynamic regulatory network that controls Th17 cell differentiation by systematic perturbation in primary cells (Affymetrix timecourse IL23 KO)
GSE44387Transcriptomal profiling of C57BL/6 wild type and ER-alpha KO mice fetal mammary gland after fetal exposure to Bisphenol A (BPA) and 17alpha-ethynylestradiol (EE2)
GSE45051Gene expression profile of liver from adult and neonatal Balb/c mice after listeriosis
GSE45365Genome-wide expression study of the early/innate responses of murine B and T cells to MCMV infection
GSE45465Dynamic changes in liver 5-hydroxymethylcytosine profiles upon non-genotoxic carcinogen exposure [Replicated control vs. pb treated study]
GSE45514Treatment of established mouse AA with topical JAK inhibitors
GSE45551Prevention of Mouse AA with IL-15 pathway inhibitors
GSE45577Profiling of glycerol- and CTX-induced models of muscle regeneration in mice
GSE45592Dicer deficiency reveals microRNAs predicted to control gene expression in developing adrenal cortex [array]
GSE46109Dynamic Gene Expression Response to TGF-β Stimulation in Multipotent Progenitors and Common Dendritic Cell Progenitors
GSE46209Non-telomeric role for Rap1 in regulating metabolism and protecting against obesity
GSE46298Whole genome transcriptome analysis identifies indices of fast and slow disease progression in two ALS mouse models
GSE46568Expression data from mouse liver tissue from SKH:QS mice treated with 68ZnO sunscreens
GSE46606Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4 (expression)
GSE46889Temporal Gene Expression Patterns in the skin of D6 null and wild type mice after inflammation with the chemical irritant TPA
GSE47546Gene expression in whole lung and pulmonary macrophages reflects the dynamic pathology associated with airway surface dehydration [left lobe only]
GSE47550mRNA expression data from whole trachea dissected from either wild-type mice or Scnn1b-Tg mice at post-natal days 0, 3, 10, and 42
GSE48564Expression data from mammary tumors from a MOLF/Ei x PyMT mouse cross
GSE48565Expression data from mammary tumors from a Diversity Outcross x PyMT mouse cross
GSE49383Gene expression data from mouse HDAC4 KO pups, postnatal day 3
GSE50250Expression data from vessels of differing embryonic origin
GSE50400Suppression of molecular inflammatory pathways by Toll-like Receptor 7, 8, and 9 antagonists in a model of IL-23-induced skin inflammation
GSE50517Shp2 Signaling Suppresses Senescence in PyMT-induced Mammary Gland Cancer in Mice [Mouse430_2 array]
GSE50789Gene expression in mouse liver in response to short-term calorie restriction
GSE50794GEMM CRC collection analysis
GSE51080Expression data from exposure of BAT and WAT at 6 and 28 degrees C
GSE51285Expression and Metabolic Profiles in a Panel of Five Neural Tube Defect Mouse Models
GSE51414Expression data from oxaliplatin-treated tumors from mice pre-treated or not with antibiotics cocktail
GSE51432β-Cryptoxanthin suppresses inflammatory gene expression in diet-induced nonalcoholic steatohepatitis in mice
GSE51483Transcriptional Atlas of Cardiogenesis Maps Congenital Heart Disease Interactome
GSE51885Liver mRNA microarray study for mice treated with various diets
GSE52333Circadian Liver Gene Expression in Animals on Normal Chow or High Fat Diet
GSE52474Late Multiple Organ Surge in Interferon-regulated Target Genes Characterizes Staphylococcal Enterotoxin B Lethality
GSE53131Expression data from livers of C57BL/6J mice fed a high-fat diet and coffee
GSE53307Expression data from multiple mouse adipose depots
GSE53607Bioinformatics Multivariate Analysis Determined a Set of Phase-Specific Biomarker Candidates in a Novel Mouse Model for Viral Myocarditis
GSE54147Pregnancy-associated alterations in DNA methylation patterns of mammary epithelial stem cells [reproductive stages]
GSE54217Calcineurin signaling regulates neural induction through antagonizing the BMP pathway
GSE54498Effect of Dot1l deletion on LSKs and GMPs
GSE54582Transcriptomic analysis of mammary tumors from MMTV-ErbB2 transgenic mice
GSE54597Dose-response modeling of early molecular and cellular key events in CAR-mediated hepatocarcinogenesis pathway
GSE54650A circadian gene expression atlas in mammals assayed by microarray
GSE55084Mouse liver transcription profiling by array
GSE55746Transcriptional profiling of liver from wild type and PXR-null mice treated with PCN
GSE55756Transcription profiling of mouse liver by array
GSE57034BAC-trap studies of Purkinje cells in normal and FMR1 mutant mice
GSE58244Role of Notch receptors in ozone induced lung injury in mice
GSE58484Expression data from mus musculus subjected to traumatic brain injury (TBI) for treatment with cyclophosphamide
GSE58915Changes of genes in time-dependent photoaged mouse model
GSE59336Identification of odorant receptors activated by odorants in vivo
GSE59422Effect of Hypertension of Dendritic Cell Gene Expression
GSE59437Expression data from mouse tissue Angiotensin II treated for 0,1,3,7days
GSE59560Molecular profiling of three tumor subtypes in Ptch medulloblastomas
GSE60088Transcriptional Profilingin Sepsis-induced Experimental Multiple Organ Dysfunction Syndrome
GSE60149Global hepatic transcript data from fasted male BXD strains on chow or high fat diet
GSE60780Gene expression profiling in mice overexpressing human wild type (WT) keratin 8 (K8) or K8 variants (G62C and R341H).
GSE60856Expression data of isolated motor neurons from SOD1 G93A mice, after G-CSF treatment
GSE61847Inflammatory profile of NOD.Batf3-/- islets
GSE61937Neuron-specific deletion of the miRNA-processing enzyme DICER induces severe but transient obesity in mice
GSE62635Transcriptional responses of mouse adipocytes during insulin resistance
GSE63027Expression data from GNMT and MAT1A knockout models that develop all the stages of non-alcoholic fatty liver disease including hepatocellular carcinoma [GNMT_MAT1A_3&8_months]
GSE64522Expression data from mammary tumors from a generation 7 Diversity Outcross x PyMT cross
GSE65888In vivo electroporation-based conditional oncogenic activation implicates multiple distinct cellular origins for Group3 medulloblastoma

Citation

COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH). Nucleic Acids Res. 2016 Sep 26. pii: gkw868. [Epub ahead of print]
PMID: 27679477 DOI: 10.1093/nar/gkw868

Contact

Insuk Lee (insuklee (at) yonsei.ac.kr)

Funding

This project was supported by the National Research Foundation of Korea grant
(2012M3A9B4028641, 2012M3A9C7050151, 2015R1A2A1A15055859).